Xxan022702.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:18309416-18311458[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00017 0.0034 18.2 5.5 1 23 144 166 144 166 0.98
2 19 8.1e-05 0.0017 19.3 1.7 2 23 173 194 172 194 0.96
3 19 2.2e-06 4.6e-05 24.2 4.0 1 23 200 222 200 222 0.99
4 19 1.2e-05 0.00025 21.8 1.1 1 23 228 250 228 250 0.99
5 19 0.0012 0.024 15.6 1.4 1 23 256 278 256 278 0.98
6 19 3.5e-05 0.00073 20.4 5.1 1 23 284 306 284 306 0.99
7 19 0.00031 0.0064 17.4 5.8 1 23 312 334 312 334 0.98
8 19 1.4e-05 0.00028 21.7 3.3 1 23 340 362 340 362 0.97
9 19 0.00041 0.0083 17.0 4.0 1 23 368 390 368 390 0.98
10 19 0.00019 0.0039 18.1 0.8 1 23 396 418 396 418 0.98
11 19 0.00027 0.0056 17.6 1.0 1 23 424 446 424 446 0.98
12 19 0.0014 0.029 15.3 0.2 1 23 452 474 452 474 0.95
13 19 2.5e-05 0.00052 20.8 2.0 1 23 480 503 480 503 0.96
14 19 0.043 0.88 10.7 1.6 1 23 509 531 509 531 0.98
15 19 8.1e-06 0.00017 22.4 1.3 1 23 537 559 537 559 0.99
16 19 4.9e-06 0.0001 23.1 3.2 1 23 565 587 565 587 0.99
17 19 0.00028 0.0057 17.6 1.9 1 23 593 615 593 615 0.98
18 19 2.8e-06 5.7e-05 23.9 2.0 1 23 621 643 621 643 0.99
19 19 0.00023 0.0046 17.8 0.9 1 23 649 671 649 671 0.99

Sequence Information

Coding Sequence
ATGAATGTTAACATGGAAGAGAACTCATCTATGAATTCACCAATTACAATGAacaatgaaatttttataaaaactgaaatcaaagacgaaccaaTGGATGACAAATCACTGTACCCAACAGACTGTACTGGTGAAACAGTTGCTCTATCCAAATACGGGAATAGTTTCAGCTGCGATTCCAAGATTGGAATTGGGAACACTAAACTAGATGTGGAAGAGGCAGAATCTGCCACATTTAGTTCAACAAACCAAATTAACGAAGTAATGTTcataaaatccgaaatcaagaATGAACCGTCGGATGATAAATCATTCATATTTTTACCGGAACATTTCGATTCCTCCGCTTCGTTTAACGTCGAAGGCAGCGAAATGGCTTGTGGTCCCACATCAGGGATACAGAATCGAGTGCCTACTAGTGAGAAACCATTCAAGTGCggcgtttgtaaaaagtgcttcAACAATATGCGTGACTTGAAGAAACACCGGCGCCTGCATTCTGGCAAAAAAAGATGGCAGTGtaacttttgtaaaaaaagtttcagatatACAAGTGATTTGTTGAGGCACACGCTTATACACAGTAGTGAAAAGCAatacaagtgtgacgtttgtaataagagctTCACTCATAAAGGTTCGTTAACAacacacaaacgtatacataccggTGACAAACCGTATCAATGCGACGTTTGTAACAAAAGCTTTGCTTATACAATAAGTTTGACAAGGCACAAACGCGTACACACCGATGAGAAACAtcatcagtgtgacatttgtaataaaatctTCAATACAATGGCTCGTTTATCAAttcacaagcgtatacatactggtgagaaaccatatcagtgtcttgtttgtaaaaaatgctttaGTCAATCAGAACGTTTAAAGAGACACTATCGCGTGCATACCGGAGAGagaccatatcagtgtgacgtttgtaacaagaGATTTAATCAAGCGTGTCATCTGAAGTCACACAAACTTAtgcacactggtgagaaaccttatcagtgtgacgtttgtaataagtgttttgtTCAGTCGAGTTCTCTGAAGTCTCACAAGCTCTTGCATACCGATCacaaaccttatcagtgtgacgtttgtaataagtgttttaatCAAACAAGGACTCTGAAGTTACACAAacttatacatactggtgagaaaccttatcagtgtgacgtttgtaataagagtttttaTCAAGCGAGTATTCTGAAATCACACACGCTTAtgcacactggtgagaaaccgtatcagtgtgacgtttgtaaaaaatactttggcACATCAGTAATGTTAATGAAACATAATCGtgtgcatactggtgagaaaccatttcTGTGTGATGTTTGTGGAATGTCCTTTGCTACAAGCTCAACTCTTGCTTTTCACTATCGtgtgcatactggtgagagaccGTATAAGTGTGacttttgtaataagagttttacTCAAACGGGTTATTTGAAATCACACATACTTAATATGCATACTGGTGACAAACCTTTTCAGTGTGACTTTTGTGAAAAGAGTTTCTTAGATACAACACGTTTGACGattcacaaacgtatacatacgggcgagaaaccatatcagtgtgacgtatgCAATGAGAACTTCACTCGAAAGATCCAGTTAACAAATCATAAGCGTatccatactggtgagaaaccatatcagtgtgatgtttgtaaaaagtgctttCGCATATCagaatctttaaaaaaacacattcgtgtgcatactggtgagaaaccgtaccagtgcgaGATTTGTAAAGGCTGCTTTCAAACATCATCTGATTTGAGGGTTCACAATCGCGTGCACACTGGAGAGAAACCAtttaagtgtgacgtttgtgtaAAGAGTTTCACCGATAAAAGGAATTTGATAAGtcataaacgtacacataccggtgagaaaccatatcagtgtgacgtttgcgagAAGTGGTTTATTTCACAATTTAATTTGAAGAGGCACAGTCGCGTACACTCTCAAAAACGGAGTAAAAAGCTGCCTTAG
Protein Sequence
MNVNMEENSSMNSPITMNNEIFIKTEIKDEPMDDKSLYPTDCTGETVALSKYGNSFSCDSKIGIGNTKLDVEEAESATFSSTNQINEVMFIKSEIKNEPSDDKSFIFLPEHFDSSASFNVEGSEMACGPTSGIQNRVPTSEKPFKCGVCKKCFNNMRDLKKHRRLHSGKKRWQCNFCKKSFRYTSDLLRHTLIHSSEKQYKCDVCNKSFTHKGSLTTHKRIHTGDKPYQCDVCNKSFAYTISLTRHKRVHTDEKHHQCDICNKIFNTMARLSIHKRIHTGEKPYQCLVCKKCFSQSERLKRHYRVHTGERPYQCDVCNKRFNQACHLKSHKLMHTGEKPYQCDVCNKCFVQSSSLKSHKLLHTDHKPYQCDVCNKCFNQTRTLKLHKLIHTGEKPYQCDVCNKSFYQASILKSHTLMHTGEKPYQCDVCKKYFGTSVMLMKHNRVHTGEKPFLCDVCGMSFATSSTLAFHYRVHTGERPYKCDFCNKSFTQTGYLKSHILNMHTGDKPFQCDFCEKSFLDTTRLTIHKRIHTGEKPYQCDVCNENFTRKIQLTNHKRIHTGEKPYQCDVCKKCFRISESLKKHIRVHTGEKPYQCEICKGCFQTSSDLRVHNRVHTGEKPFKCDVCVKSFTDKRNLISHKRTHTGEKPYQCDVCEKWFISQFNLKRHSRVHSQKRSKKLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-