Xxan023042.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:21476783-21480983[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 6.9e-07 1.4e-05 25.8 0.8 2 23 163 185 162 185 0.95
2 21 4.7e-06 9.7e-05 23.1 3.6 1 23 191 213 191 213 0.98
3 21 5.6e-05 0.0012 19.7 4.1 1 23 219 241 219 241 0.97
4 21 0.006 0.12 13.4 4.2 1 23 247 269 247 269 0.98
5 21 3e-06 6.1e-05 23.8 5.5 1 23 275 297 275 297 0.99
6 21 0.00027 0.0056 17.6 4.8 1 23 306 328 306 328 0.98
7 21 2.7e-05 0.00055 20.8 1.9 1 23 334 356 334 356 0.93
8 21 0.029 0.6 11.2 0.1 1 23 362 385 362 385 0.95
9 21 0.012 0.25 12.4 0.3 5 23 395 413 394 413 0.94
10 21 3.2e-06 6.5e-05 23.7 0.9 1 23 422 444 422 444 0.99
11 21 5.9e-06 0.00012 22.8 2.0 1 23 450 472 450 472 0.95
12 21 1.2 24 6.2 1.0 1 23 478 500 478 500 0.90
13 21 8.2e-07 1.7e-05 25.5 1.8 1 23 506 528 506 528 0.98
14 21 0.0056 0.11 13.5 1.5 1 23 534 556 534 556 0.99
15 21 0.0013 0.027 15.4 1.5 3 23 564 584 562 584 0.95
16 21 0.096 2 9.6 4.0 1 23 789 811 789 811 0.94
17 21 0.00018 0.0038 18.1 1.2 1 23 817 839 817 839 0.98
18 21 0.00069 0.014 16.3 6.0 1 23 845 867 845 867 0.98
19 21 3.9e-05 0.00081 20.2 1.0 1 23 873 895 873 895 0.94
20 21 5.8e-06 0.00012 22.9 4.3 1 23 901 923 901 923 0.95
21 21 8.9e-05 0.0018 19.1 2.1 1 23 929 951 929 951 0.97

Sequence Information

Coding Sequence
ATGGAAGCTGTGTCTTCGAAACAAAATGTTTCGGACCGCGAAACGTCTGTGATCACAGTAAAATGTGAACACGCAATAGAAGATCGCTCGTCTATCATCgactatacttttttaagtatcaCTGAAAATGTTCGATTAAAAACAGaacaaaacacaataaaatGCGAAAATCTGGACGCCCAAGCTGTAAAAGACGAGCCAACAGACGACGACCAATATCAAACTAGTGAACACCAACGCGGTGAATACCCCATTGAAATAACTGACAGTCATTATATTAAACAAGAATATTGCAGTGTGAAGTTAGAATCAAGTGAATCTTTTAACGATAACAGTACAATAGACGGTCATAACGAACGATTTAAATGTTTTGACGACACTGATGTGAAGCCAACTACAGATCAGCATTCTGACATTGGCGACAGTACTTTTACTGATTTTAATGAACTAGAAAACCATAACATAATCAAAAACGCTAACACTCTCAACTGTAACGTTTGTGGGAAGACTTTCACGCGCGTGTCTAACTTAAGAAATCATCAACGACTCATACACACGTCGGAAAAAAGGCACCGATGTAGCATTTGTGGAAAGAGATTTACTCGCTTGTCGtcgttaaaaaatcataatcgCATTCATACCggagagaaaccttatcaatgcGACGTTTGCCAAAAGAGTTTTTCGGACAGCTGCAATTTTCGAAGACATACTTTAGAGCACAGCGACAGTAAAAAgtacaagtgtgacgtttgtgaaaaaagtttcacgCTGCAGTGTCTTTTTAAGGTTCACAAGCTAAGACACGTCGAAGATAGACCGTTCAAATGTGATACGTGCGGAAAATGTTTCACGCAACCGTACACCTTAAAAAAACATAGGTCGACCCACGACGTCAGCGTGCATCAAAAACCGCATAAGTGCCATTTTTGTGAGAAGGCATTCGCTCGGTTAGATTCATTAACGACCCATAAACGTATACATACCGGGGAGAAACCGTTTCAGTGCGACGTTTGCGATAAGAGTTTTTCAGATTACCGTAATTTCAAAAGACACACAGTTGATCACAATCGCAAAAAGCAATTTCAATGCgacttttgtgaaattttttttccggaATTAAGCGGTTTAAAGGCACACGTGTTACAGGAACATAACGATCATACTGTATTTAAACGTGATATGTGCGAAAAAATCTTTTCACAATCGAGCACTTTAAACAACCATAAGTTACTCCACGACGTCgctattgataaaaaatcgtaTAAATGCGACCTTTGTGAAAAGACTTTTGCCCGCTCGGATTCATTAAGAATCCATAAGCGTATTCATACTGGGGAGAAACCTTTTCGGTGCGATGTTTGCGACAAGAGCTTCTCAGATCAGCGCAATTTCAAGAGACACAGAGTCGAGCACGATGACACAAAACAAtttaagtgtgacgtttgcgcaAGAAGTTTTGCGCAATTTCGTATTTTTAAGTTGCACGAGCTACGACACGTCGAAAACAAGCCGTTCAAATGTGATATTTGTGGAAAAAAATTCACACAGCCGAGGAATTTGaataatcataaaaaacttCATGCCGGCGTGAAACCGTTTCAATGCGATCGCTGTGAGAAAAGTTTTATCATCATGTctgttttgaaaaaacataaacAAACACATGCCGGAGAGGATCTGCATCTTTGCGAGTTTTGCGGTAAACAGTTTGGGCGACAGGTTGACTTAAAACAACACAAACTTGTACATACCGACGAGAAACCACATAAATCTACcgACGAAATAAATTTAAGTGAAAATATCATGAAAACCAGAAATTCTAAGCGACTATTACCAGATCTTAAAAACCAAACTTCGAGTACAGTCATTGTTAAGTCAGAGATCGTAGATGATGCAACCCCGATTGAAGATACTTTATCAAAAGATCCGctccaacaaaaaattaaacaggaAAAATGTGATGCTTCTGAAAATAGTGAAACAGTTTGGTTCGAAGAAGAGAAGTTAGTAAAACGTGAAATTTCTGAAAGTTTGGAAGAAGAAATGATCattaaagaagaaaatactCTTGACTGTGATGATGATGATGCATTGGATCATAACTATGACGTTGCCGATTGGGTAGAAACACAATTGGATGTTGACAACACTGATTTAAACTTAACGACCGACGAACCGGTgcgaaaaaacgaaaaaaatcacaTTGATATCGTCACGTTATCAAATTGGCGTAATTGCATTGGTAAGAAACTAGATTCGAGTGGTTCTaaagtcaaaacaaaaaaacaaggtaacaaaataataaagcaaGCCAATGCTATGCCAAAAAAACAAGTCACTAGAAAACCTAAACCAACGCCTTTCAAATGCGATCTTTGCGATAAAAGTTTTACGCTGTTTCATCGTTTAGCGTCACACACGTTTCAACATACCGGGGAAAAACCGTACCAGTGCGACATTTGCAAGAGACGTTTCGGACGAATCGATAATTTAAAATCGCATGAATACACGCACGCGAAAGTAAAACCGTTCCAGTGTGACATCTGCGACAAGTATTTCACGCTCAGTCATCATTTAAATACGCACAAACGACTTCATACGGGTGAGAAACCTTTCGAATGCGACGTTTGTAAGAAGCGGTTTGCGCGCTCTGATAATTTGAAGTCGCACAAAGTTTTGCATTccggtgagaaaccgtttcTCTGTGATCTTTGTGATAAGTGTTTTGCTCGCAAAGATAATTTGAGAAAACATAAACGTATGCATACTGGTGCGCGACCGTATAAATGCGATATTTGTAGCGGATGTTTCAGCAGATCCGACAACTTAAAAGCGCATAAACTTCTTCACTTcaaagataaaatataa
Protein Sequence
MEAVSSKQNVSDRETSVITVKCEHAIEDRSSIIDYTFLSITENVRLKTEQNTIKCENLDAQAVKDEPTDDDQYQTSEHQRGEYPIEITDSHYIKQEYCSVKLESSESFNDNSTIDGHNERFKCFDDTDVKPTTDQHSDIGDSTFTDFNELENHNIIKNANTLNCNVCGKTFTRVSNLRNHQRLIHTSEKRHRCSICGKRFTRLSSLKNHNRIHTGEKPYQCDVCQKSFSDSCNFRRHTLEHSDSKKYKCDVCEKSFTLQCLFKVHKLRHVEDRPFKCDTCGKCFTQPYTLKKHRSTHDVSVHQKPHKCHFCEKAFARLDSLTTHKRIHTGEKPFQCDVCDKSFSDYRNFKRHTVDHNRKKQFQCDFCEIFFPELSGLKAHVLQEHNDHTVFKRDMCEKIFSQSSTLNNHKLLHDVAIDKKSYKCDLCEKTFARSDSLRIHKRIHTGEKPFRCDVCDKSFSDQRNFKRHRVEHDDTKQFKCDVCARSFAQFRIFKLHELRHVENKPFKCDICGKKFTQPRNLNNHKKLHAGVKPFQCDRCEKSFIIMSVLKKHKQTHAGEDLHLCEFCGKQFGRQVDLKQHKLVHTDEKPHKSTDEINLSENIMKTRNSKRLLPDLKNQTSSTVIVKSEIVDDATPIEDTLSKDPLQQKIKQEKCDASENSETVWFEEEKLVKREISESLEEEMIIKEENTLDCDDDDALDHNYDVADWVETQLDVDNTDLNLTTDEPVRKNEKNHIDIVTLSNWRNCIGKKLDSSGSKVKTKKQGNKIIKQANAMPKKQVTRKPKPTPFKCDLCDKSFTLFHRLASHTFQHTGEKPYQCDICKRRFGRIDNLKSHEYTHAKVKPFQCDICDKYFTLSHHLNTHKRLHTGEKPFECDVCKKRFARSDNLKSHKVLHSGEKPFLCDLCDKCFARKDNLRKHKRMHTGARPYKCDICSGCFSRSDNLKAHKLLHFKDKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-