Xxan022739.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:18946871-18950239[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 1.1 23 6.2 3.6 1 23 271 293 271 293 0.97
2 22 1.6e-06 3.3e-05 24.6 1.9 1 23 299 321 299 321 0.99
3 22 0.0033 0.067 14.2 4.5 1 23 327 349 327 349 0.97
4 22 0.00057 0.012 16.6 3.7 1 23 355 377 355 377 0.98
5 22 0.026 0.54 11.3 3.9 1 23 383 405 383 405 0.96
6 22 0.00079 0.016 16.1 2.8 1 23 411 433 411 433 0.99
7 22 2.2e-05 0.00044 21.1 2.5 1 23 439 461 439 461 0.99
8 22 1.7e-05 0.00034 21.4 2.5 1 23 467 489 467 489 0.97
9 22 0.0014 0.03 15.3 6.1 1 23 495 517 495 517 0.98
10 22 0.0067 0.14 13.2 7.1 1 23 523 545 523 545 0.96
11 22 0.00014 0.0029 18.5 3.7 1 23 712 734 712 734 0.99
12 22 0.00012 0.0026 18.7 6.1 1 23 818 840 818 840 0.98
13 22 0.00015 0.003 18.4 5.4 1 23 846 868 846 868 0.99
14 22 6.8e-06 0.00014 22.6 2.6 1 23 874 896 874 896 0.98
15 22 4.7e-07 9.5e-06 26.3 2.9 1 23 902 924 902 924 0.98
16 22 8e-06 0.00016 22.4 4.5 1 23 930 952 930 952 0.97
17 22 0.16 3.3 8.8 2.2 1 23 958 980 958 980 0.90
18 22 7.2e-06 0.00015 22.5 0.7 1 23 986 1008 986 1008 0.96
19 22 2.6e-05 0.00052 20.8 2.4 1 23 1014 1036 1014 1036 0.98
20 22 2.5e-06 5.2e-05 24.0 4.2 1 23 1042 1064 1042 1064 0.99
21 22 1.6e-05 0.00032 21.5 1.5 1 23 1070 1092 1070 1092 0.99
22 22 0.0012 0.024 15.6 6.1 2 23 1099 1121 1098 1121 0.97

Sequence Information

Coding Sequence
atgtctaccgcagttgtagacgaaacgacgGGAAGAAATACCAATGAAGCAAGACCTACAAGTTTGGAAACCAACAAGATTTGGTACAACACCGGCAGCGAAAGCCGACACACTTGGATATTTCTGTTTCAGGTATCAAAATGCGACGAGATGCCAAAATTCATGTGTCAGATATGCCACACGCAACTAGAGAAATTTTACGAGTTCCAGATACAAGTAGTTCAATCTGACAAAACACTGCGGCGCTGTCTACAGCAACTGTACACTTCTAATAAACAAACGAAGTCTGGATATTCAAATCAAACACTGTCTGAGGATCCTTTAATTAATAATCCAGATATGATCACTATAAAATGTGAATCTTTAGAACAGGGCGTGTTTGACACTGCAAGCTACAGTTCTGAAAACAACGAAGACTTGTCTTTAAGTTCCGAAATAAAAAACGAAGTGATGGATGACAGTTCTTTAATTCCAACGGATTGTGTTGACGTAACATTAGATATTTTATCTAAATGTGGCAACACTGGATTTGATTGTGGAGACTCAAATATTGATGTTGGCACACCTGGTGAAAGAATGTCTTTGAAATCTGAGATGGCAGAAGAACCGAAGGATGATAATTCATTAATCCGAAGagaatattttaacataaagaACGCAGCGTCTAATGGTGATAGTAAGTGCGAAGATAAATCGGGTAAATTCGCGAATCTTCGGTCTGCTGATAAAAGAGCATATTATAATCGTGAAAAGAGGAACAAAACCACCCCGAAAATTGCTGACAAGtgcaaagaaataaataaaacgttacATAAATGCGATAATTGTGAAGTGACTTCCTCCCGGTTAGAAGATGTTAATAGACATAAATGTCTGCATACTGGAGAGAAATCGTATAAATGTCCCGTTTGTAAAAAGAGTTTTATCCAGTTTAGTGATTTGAAAATccacaaacgtacacatactagtgagaaaccatatcaatgtgacatttgtcacAAATGTTTCActcaatcaaaaattttaattaaccaCAAACTTATACATACTGGTAAGAAACCATACGAGTGTGACGTGTGCCATAAAAGGTTCTTTTATATGGGGAATTTAAAAACTCACAAAcgtgtacatactggtgaaCGGCCATATCACTGCGATGTTTGTAACAGGCGATTTAATAACGTAGGCCATTTTAACGTCCACAAACTTCTACATACTGGGGAGAGGCCATATCAGTGTGTCGTTTGTAATCACCGTTTCGTTAAGTCGTGGATGTTGGAAAAGCACAAACGCACACATTCAGATAataaaccgtatcaatgtgacatttgtgatAAGAGTTTTACGATCAGAAGAAATTTCAATCTTCACAAACGtacgcatactggtgagaaaccgtacaagTGTATTGTTTGCGATAAACGCTTCAACAATTCGAGCAATCTGAATAAACATAAACGaatgcatactggtgagaaaccatatgaATGTAACCTATGCAGTAAACGTTTTAACAGTTCAAGTCATTTACATGAACATAAACTACgacatactggtgagagaccGCATCAGTGTAACGTTTGTAATATGTGTTTTGTTACATCTGGAAGTTTAAAGAAACACAAACATCTTCATACTAGTGAAACAGAAACGAATTTTTATTCGGTGGATAAAATTAACGAAGAAATGTTTACAAAGCCCGAAATACCCCTggaatattcatttatttcaacAGAATGTACTGATGATACAGTAGAAATATTATCTGAAGACGGTAATAcagaaaactcaaaaattagcTCAAAATCAGGCGAGGGCATGGATGTTAATTGGAAAGATAAAGGATCTGCGAGTTTTAGATCAGAGAAAGATAATGATCCATTAAATATAATAGAGGGTACTGATAACAGCAACTGTAGTGGTGAAACCGGTGGCGAAGACACGTCGGGAAACTTCGAGAATCTTCGTTCTTCTAATGTAACAGAATATTGTGGACAGGGGAATAACAGTATGTCGGCGAATAATAAGGAACCCAAAAAAGGAAATAAACATGATTTCTATCAGAGTAACATTTGCGACCTGTATTTCACCAATTCGTCAAGTTTAAGCGAAGACAAGCAAAAAGAGAAAtcgtatcagtgtgacctttgtaacaagtgttttgataatttaaataatttaaacgaaCACAAAAATCGACATGTCGAGACATCGTCTTTAAAATCTGAAATCGCAAACAAACCGACGAATGACCATTCAAAAATCAAAGTAGAATTTATGGACAGCACAGTAAAGGCTTCATCTAAAGATGATGGCAATGAAAGCAGTTACGAAGAACTCGCGTCGGAGAACTTCGTGAATTCTCGTACTGCTGGACATTCTAATCAACGTGGACAGATTAAAAGTACTACAATAAATAACgttgaaaaaaaagaacataAAATTAGTTCGTACCAATGCGACATTTGTGGTACCTGTTTTACCCATTTGGCAAGTTTTCAAAGACACAAACGCTaccatactggtgagaaaccgtatcagtgtgacgtttgcagtaAATGTTTCATTACATCCGGATGTTTAAATAAACATAAGCGtgtacatacaggagagaaaccgtataaatgtgacatttgtaataagaattTTACTCGGTCAACCAGTTTAAAGATTCATAAGCgtttacatactggtgagaaaccgtacgaGTGTTCCGTTTGTAATAAAAGTTTCAGCAATTCAAGCAATTTTAGAAAACATAAACGTGTACATACcggagagaaaccataccagtgtaaTATTTGTGATAAGCGTTTTAGTAATTCGAGTCATTTAAATGAACATAAGTTTCGACATACTGGTGAGACACCGCAtcgatgtgacgtttgtaacaagtgCTTCGCTGATgcgttaattttaaaacaacataaACTTGGACATTCTGATGAGAAACCGTATTTATGTGACGTTTGTGATAAGACTTTTACCAAACCATACCAATTAAATGTTCACAAACGcattcatactggtgagaaaccatataagtGTGAAAGTTGTGAGAAGAGTTTTAATTCTTCCAACAATTTAAGAAAACACAATCGAAttcacactggtgagaaaccatataagtgtgacgtttgcgatAAGTGTTTCGCTTATTCTAGTACATTAAATACTCACAGACGTACGCACacgggtgagaaaccatatcagtgtgacatttgtaataagagtttgtATAATTCAAGTTATTTGGAAAAACATAAACgtatacataccggtgagaaacaaAGTCAGTGTGACCAGTGTAGTAAATGCTTTACCCATCCAAACAGCTTAAAATATCACAAGCGTACTGTACATTCGTGA
Protein Sequence
MSTAVVDETTGRNTNEARPTSLETNKIWYNTGSESRHTWIFLFQVSKCDEMPKFMCQICHTQLEKFYEFQIQVVQSDKTLRRCLQQLYTSNKQTKSGYSNQTLSEDPLINNPDMITIKCESLEQGVFDTASYSSENNEDLSLSSEIKNEVMDDSSLIPTDCVDVTLDILSKCGNTGFDCGDSNIDVGTPGERMSLKSEMAEEPKDDNSLIRREYFNIKNAASNGDSKCEDKSGKFANLRSADKRAYYNREKRNKTTPKIADKCKEINKTLHKCDNCEVTSSRLEDVNRHKCLHTGEKSYKCPVCKKSFIQFSDLKIHKRTHTSEKPYQCDICHKCFTQSKILINHKLIHTGKKPYECDVCHKRFFYMGNLKTHKRVHTGERPYHCDVCNRRFNNVGHFNVHKLLHTGERPYQCVVCNHRFVKSWMLEKHKRTHSDNKPYQCDICDKSFTIRRNFNLHKRTHTGEKPYKCIVCDKRFNNSSNLNKHKRMHTGEKPYECNLCSKRFNSSSHLHEHKLRHTGERPHQCNVCNMCFVTSGSLKKHKHLHTSETETNFYSVDKINEEMFTKPEIPLEYSFISTECTDDTVEILSEDGNTENSKISSKSGEGMDVNWKDKGSASFRSEKDNDPLNIIEGTDNSNCSGETGGEDTSGNFENLRSSNVTEYCGQGNNSMSANNKEPKKGNKHDFYQSNICDLYFTNSSSLSEDKQKEKSYQCDLCNKCFDNLNNLNEHKNRHVETSSLKSEIANKPTNDHSKIKVEFMDSTVKASSKDDGNESSYEELASENFVNSRTAGHSNQRGQIKSTTINNVEKKEHKISSYQCDICGTCFTHLASFQRHKRYHTGEKPYQCDVCSKCFITSGCLNKHKRVHTGEKPYKCDICNKNFTRSTSLKIHKRLHTGEKPYECSVCNKSFSNSSNFRKHKRVHTGEKPYQCNICDKRFSNSSHLNEHKFRHTGETPHRCDVCNKCFADALILKQHKLGHSDEKPYLCDVCDKTFTKPYQLNVHKRIHTGEKPYKCESCEKSFNSSNNLRKHNRIHTGEKPYKCDVCDKCFAYSSTLNTHRRTHTGEKPYQCDICNKSLYNSSYLEKHKRIHTGEKQSQCDQCSKCFTHPNSLKYHKRTVHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-