Xxan022531.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:16716412-16719490[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 4.8e-05 0.00099 20.0 4.7 1 22 261 282 261 282 0.96
2 19 4.3 89 4.4 0.1 5 23 293 311 292 311 0.94
3 19 5e-07 1e-05 26.2 1.3 1 23 317 339 317 339 0.99
4 19 5.4e-05 0.0011 19.8 4.4 1 23 345 367 345 367 0.98
5 19 1.4e-06 2.8e-05 24.8 4.0 1 23 373 395 373 395 0.99
6 19 9.3e-05 0.0019 19.0 1.8 1 23 401 423 401 423 0.99
7 19 0.0028 0.058 14.4 3.0 1 23 429 451 429 451 0.99
8 19 0.00016 0.0033 18.3 1.2 1 23 457 479 457 479 0.98
9 19 6.3e-07 1.3e-05 25.9 3.4 1 23 485 507 485 507 0.99
10 19 1.3e-06 2.6e-05 24.9 5.4 1 23 513 535 513 535 0.99
11 19 0.00016 0.0032 18.3 3.3 1 23 541 563 541 563 0.98
12 19 1.2e-05 0.00025 21.8 2.1 1 23 639 661 639 661 0.98
13 19 1.2e-05 0.00024 21.9 3.0 1 23 667 689 667 689 0.99
14 19 0.013 0.26 12.3 5.7 1 23 695 717 695 717 0.96
15 19 0.0002 0.0041 18.0 4.6 1 23 723 745 723 745 0.99
16 19 7.2e-06 0.00015 22.6 3.2 1 23 751 773 751 773 0.99
17 19 7e-05 0.0014 19.4 2.7 1 23 779 801 779 801 0.99
18 19 1e-06 2.1e-05 25.2 5.1 1 23 807 829 807 829 0.99
19 19 4.2e-05 0.00086 20.2 4.2 1 23 835 857 835 857 0.98

Sequence Information

Coding Sequence
atgaaagaaatatcaATAACTCGCCGTTGCCTTAGTACAATGTGTCGATTATGTTTATCAAGAGGTGTAACGATGCTTGATGTGTTTCGGTTTCCACCTAGAGTTAAAGACAAAATTGCTGATATGATAATGAAGTGTGCTCCTGTACAGATACTGAGATACGACGAGATGCCGAAATTCGTTTGTCAATTATGTTTTACTCGATTGGAGGAAATGCATCAgttccaaataaaaataatacagtctGACAAAACACTACGACGCTATTTATGGCAACTGCATGCTTCTGATAAAGAACGCCTGATCGAGAGTTCTATTCAGAGGTCAAATGATTCTTCAATCGTTAATACTAATTCAGACATCAGGTATGATTCTACAGTACTTCATGGCGTGTTTGACTTGAATGTCAACTGGAGAGAAAAAGAATGTTCGAACTTTAGTTCGGGAAGCAAAAATAACGatgaaatatctttaaaatacGAAATAAAAGTAGAACAAATAGACAAGAATGCAATAACTCTACCAGACTGTGCTGATGATCCCTTAGACATTTGGTCTAAAGGTGATGAGTTCACTGATATCAATATTGGCGAGAGGAATATGGAAACAACTTTGAATTTTAACTCAACATGCAAAAGCATTGAAATTAAACCCGAAATCAAAAACGAACCGATAGATGATGAATTGTTAATAAATACAGAAAATGTTTCATCTAACAATTATGACAGTGAAATCAACAATGAAAACATAAATTTTGATATTGACCACATTTCGGGAAACTATTCCTGTAACacttgtaataagtgtttcgttAATTCAGATGATCTTAAAAATCATATGTGTACTGACACTGGAGAGAAACTGATTCAATTTGAGATTTGTAATAGGTTTATCTCCGgctatgaaaatttgattaaacataAACTTATACATACCGACGctaaaccttatcagtgtgacatgtgTGATAAGTCTTTCGCGCGAAAAGCCTATTTAATTAACCACAAACGTACGCATACTGGGGAAAAACCACATCAAtgtaacatttgtaataagtgtttcgctCTTGctgatagtttgaaaaaacacaaACGTGTGCATACAGGaaagaaaccgtatcaatgtgacatttgtaataagtgcttCACTCTTGCTGATAATTTGAGAAAacacaaacgtacacatactggagagaaaccatatcaatgtgacgtttgtaataagtgtttcgctCTTGCTGATAGTTGGAAAAAACACAAACGTGTACATACAGAAAacaaaccatatcaatgtgataTTTGTATGAAGTGTTTCGTTGTAGATTCGTATTTGCAATCTCACAAACGTACACATTCTGGTGAGAAGCCGTATCGATGTGACATTTGTGATAAGTGCTTCGCTCTTGCTGATAGTTGGAAAAAACACAAACTtgtacatacaggagagaaaccatatgaatgtgacatttgtaagaagtgtttcgcAACAAGTTCGAATTTGGCTCGTCACAAACGTAggcatactggagagaaacgtTATCAATGCcccatttgtaataaatgtttcattcaGTCATGTAATTTAAAAAGTCATATGCGTctacatactggagagaaaccgtaccaatgtAACATTTGTGATAAATGTGTCACACATGCAGCTAGCTTAAGTAGACACAAACTTTCCCATGCTggagaaaaaacaaattataccgCCGAGTGTAAAGCGGAAGCACCTGCCGATTTTGAATCGGAAACTAAAAGTATTGaggaaatatatttaaaatccgATATCAAAGACACGCCGACATATGATAATGAATCAATAATTCAAACAGAATCAATTGTGGACACACAAAATACTAGATCTAACGATTGCGGTAGTGAAATCAACAATGATGACATATACAAACCATATCAGTGTaacctttgtaataagtgtttcgctCGTGCTGATggtttgaaaattcacaaacgcctacatacaggagagaaaccatatcgatgtgacatttgtaataagtgttttgcTCGTGCTGATCGTTTGAAAAATCACAAACGTgtgcatacaggagagaaaccgtataaCTGTGACATTTGTAACAAATGTTTCGCTTTTTCTAATTGCTTGATAAAACACAAAAGTttgcatacaggagagaaaccgtatcgatgtcacatttgtaataagtgcttCGCTCTTGCTGATAGTTGGAAAAAACACAAACGTGTGCATACAGGAAAGAAACCGTAtcgatgtgacatttgtaataagtgcttCGCTTTTGCcgatagtttgaaaaaacacaaacgtgtacatacaggagagaaaccatatcaatgtgacatttgtaagatgTGTTTCCCAATAAGTTCAAATTTAGTTCGTCACAAACGTAAGCACACTGGAGATAAACGTTATCAATGccacatttgtaataaatgtttcattcaGTCATCTGGTTTAAAAAGTCATATGCGTctacatactggagagaaaccgtaccaatgcGACGTTTGTGATAAATGTTTCACACATGCAGTTAGCTTAAGTAGACACAAACTTTCCCATGCTGGAGAAGAACCAAACGAATATTCAGCTATCGATGTTGGCGAAACTAAAGTGGAAGCACCGGTAACCGAAAGTATTGATGAAACAAATTTGAAAGTCGAAATCAAAGACGCACCGATATGA
Protein Sequence
MKEISITRRCLSTMCRLCLSRGVTMLDVFRFPPRVKDKIADMIMKCAPVQILRYDEMPKFVCQLCFTRLEEMHQFQIKIIQSDKTLRRYLWQLHASDKERLIESSIQRSNDSSIVNTNSDIRYDSTVLHGVFDLNVNWREKECSNFSSGSKNNDEISLKYEIKVEQIDKNAITLPDCADDPLDIWSKGDEFTDINIGERNMETTLNFNSTCKSIEIKPEIKNEPIDDELLINTENVSSNNYDSEINNENINFDIDHISGNYSCNTCNKCFVNSDDLKNHMCTDTGEKLIQFEICNRFISGYENLIKHKLIHTDAKPYQCDMCDKSFARKAYLINHKRTHTGEKPHQCNICNKCFALADSLKKHKRVHTGKKPYQCDICNKCFTLADNLRKHKRTHTGEKPYQCDVCNKCFALADSWKKHKRVHTENKPYQCDICMKCFVVDSYLQSHKRTHSGEKPYRCDICDKCFALADSWKKHKLVHTGEKPYECDICKKCFATSSNLARHKRRHTGEKRYQCPICNKCFIQSCNLKSHMRLHTGEKPYQCNICDKCVTHAASLSRHKLSHAGEKTNYTAECKAEAPADFESETKSIEEIYLKSDIKDTPTYDNESIIQTESIVDTQNTRSNDCGSEINNDDIYKPYQCNLCNKCFARADGLKIHKRLHTGEKPYRCDICNKCFARADRLKNHKRVHTGEKPYNCDICNKCFAFSNCLIKHKSLHTGEKPYRCHICNKCFALADSWKKHKRVHTGKKPYRCDICNKCFAFADSLKKHKRVHTGEKPYQCDICKMCFPISSNLVRHKRKHTGDKRYQCHICNKCFIQSSGLKSHMRLHTGEKPYQCDVCDKCFTHAVSLSRHKLSHAGEEPNEYSAIDVGETKVEAPVTESIDETNLKVEIKDAPI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-