Xxan020398.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754474.1:5319585-5322072[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00073 0.015 16.2 3.7 1 23 219 241 219 241 0.98
2 18 5.6e-05 0.0012 19.7 1.8 1 23 266 288 266 288 0.99
3 18 1.2e-05 0.00024 21.9 1.9 1 23 294 316 294 316 0.97
4 18 2e-05 0.00042 21.1 1.9 1 23 322 344 322 344 0.99
5 18 1.9e-06 4e-05 24.3 1.2 1 23 350 372 350 372 0.98
6 18 2.1e-05 0.00044 21.1 1.8 1 23 377 399 377 399 0.98
7 18 0.0019 0.038 15.0 0.3 1 23 405 427 405 427 0.98
8 18 0.00038 0.0077 17.1 6.6 1 23 433 455 433 455 0.97
9 18 0.00067 0.014 16.4 0.2 1 23 461 483 461 483 0.96
10 18 1.5e-05 0.0003 21.6 0.3 2 23 490 511 489 511 0.97
11 18 4e-05 0.00082 20.2 0.4 1 23 517 539 517 539 0.97
12 18 0.00026 0.0053 17.7 6.2 1 23 545 567 545 567 0.99
13 18 6.7e-05 0.0014 19.5 2.0 1 23 573 595 573 595 0.98
14 18 1e-06 2.1e-05 25.2 0.8 1 23 601 623 601 623 0.98
15 18 8.8e-08 1.8e-06 28.6 0.5 1 23 629 651 629 651 0.98
16 18 7.1e-05 0.0014 19.4 0.9 1 23 657 679 657 679 0.98
17 18 3.5e-05 0.00072 20.4 3.7 1 23 685 707 685 707 0.98
18 18 2.6e-05 0.00052 20.8 0.7 1 23 713 735 713 735 0.98

Sequence Information

Coding Sequence
ATGATCGACTTGTCGGTACCAGGGCGTGGGTTGAGTAAAATGTGTAGAATATGTTTAACTGGAGATGTCAAACTTATCAACTTATTTGTATTTTCATCGAAATTGAAAAGTCCTATTGTGGATGTACTTTCAAAATGCACTCCCGTTCaggtAACAAAAAACGATGAACTTCCTTCATTCATTtgcaaattgtgttattttgaGTTGGAGAAACTAGACAAGTTTCGAGCGAAGGCCGTACGGTCCGAATTCATTTTGCGCCACTATTTAAACATTCTTCGTAACGCCGACTCTTTTCAACGCGCGTCTGAATCTTCAGGCAACAATTCTGAAGGAAAGTGTTTAGAAAAATGCCCGAACAGTTCGAACACTGAAACTGAAAATTGTACTGACCTGGATTCTTCAGTTAAtcgtcaaaatttaatttctgtaaaTTCTACCGTTAACGATGATGTTTTACTTACAATTAAACAAGAAGAAGGTGACGATTCTGGAGCtcttgaaagtttaaaaaatgacgATAGTGTTAACGTATTTATCGCGAACGATACGAGCGGAAACTCAAGTGATAGcgacactttaaaaaaaacagattcTGAGACTGatgattcaaaaacaaaaaaatctgagATATTCCGCGACGGTTTAAAATTATATCACTGCGATATTTGTACAATGCAGTTCGAGCGAAAAGATTTATTAACAAATCACAAACGCAGACATACAAGAGATAGGTCCAAAAGTGttctaaacaataaacaaacgacTGTAGTGTACTGTAACGATAAAAAACTGTACCAGTGCAACGattgcaaaaaactttttaaccgCTTAACACTTTTATCAGTTCATCAACGttcacatactggtgagaaaccgttccATTGCGAAATTTGCGGTAAAAATTTCGCTCGCGCCAGCTACATGAAGAAACACGTACGcctacataccggtgagaaacctttCCAGTGCAATTTCTGTCCGAAGAATTTCAGTGCGTCGAGTGACTTGATAAAACATAAACGtaaacataccggtgagaaaccgtttAAGTGCGGCGTGTGCGATAAAACATTCGGAAGAAAAGACAATTTGAAAACACACGAACGTCTTCATTCCGGCGAAAATTACATGTGCGACGTTTGCGGCAAATGCTATTCAAGTTCGGGAAGTTTATTGAATCATAAACGCTTACATTCCGGCGAGAAACCGTTCCAGTGCGACGTCTGTAGTCGACGTTTTATCAGCGCCAGCATTCTGAAAGATCATCTCGAAACGCATTCCGACTTCAAACCTCACGAATGCAACTTTTGCGGCAGACGCTTCAGACAGTTGCGTCATTTGAAAAGTCATATTTTTActcataccggtgagaaaccgtatcagtgtgaagtTTGCGGCATGTCGTTCATAAAACAAATGCGGTTAAAACAGCACGTGCTGGCTCACACGGACAAACATCTGACGCGTTGCAGCGTTTGTGACAAGTCGTTCGCCGATCCCTACTACCTCAAAGTACACGAACGTCTTCATACAGGAGAGCAACCGTTCCCGTGTGACGTGTGCGACAAACGTTTTAATACGGCCATCTCGTTGAAAACTCACAAACAAGTACATACCGGGGAACGACTGTATCGTTGTTGTTTGTGCGATAAGTCTTTCATGCACGCGAGCACGTTAAAAACGCACGAACGTACacatacaggtgagaaaccgTTCGAATGCGACGTCTGCAAGATGCAGTTCGCGCAGTCTTCGCATCTGAGTCGTCACAGGAATATACacaccggtgagaaaccgtttcAGTGCGATCAGTGCGGCAAATCGTTCAGACAGTCGGGCGACTTGAAACAGCACGCGTTGCGTCATGCCGGCACGAAACCGCACGTTTGCAACATTTGCGGCAAGTCATTCGTGCAGGCGAGTTATTTGAAAGTTCACATAAGAATTCATACCGGCATGCAACCCTACACTTGCAACGTGTGCGGTAGAGGATGTAACAACCCGAGCACGCTAAAAGTACATAAACTTATACATACTGGGGAAAAACCGCATCGGTGCGATCTGTGTAACAAATCGTTTTCACAACTGTATACCCTTAAAGTGCATAAACGTGTTCATACAGGTGAGACGCCGTTCCAATGTGATATTTGCGGGAAATGGTTTAGTGATTCGGGGACGTTGAAAAAACACAAGAAAATACACGCCAAGGCCAATGACAAAAGTGAATCGTTAAAACAAAGTGAACGAAACGATAATATTGTAACGGCAAAACAAAACGACGCCGAAACAACAAAAGTTGATTCGAATGCGGAAGGTGCCATGGTATATTTAAGTGTGGCGGATAACCGTTCGTTTACTTTGTTTACAGATTGA
Protein Sequence
MIDLSVPGRGLSKMCRICLTGDVKLINLFVFSSKLKSPIVDVLSKCTPVQVTKNDELPSFICKLCYFELEKLDKFRAKAVRSEFILRHYLNILRNADSFQRASESSGNNSEGKCLEKCPNSSNTETENCTDLDSSVNRQNLISVNSTVNDDVLLTIKQEEGDDSGALESLKNDDSVNVFIANDTSGNSSDSDTLKKTDSETDDSKTKKSEIFRDGLKLYHCDICTMQFERKDLLTNHKRRHTRDRSKSVLNNKQTTVVYCNDKKLYQCNDCKKLFNRLTLLSVHQRSHTGEKPFHCEICGKNFARASYMKKHVRLHTGEKPFQCNFCPKNFSASSDLIKHKRKHTGEKPFKCGVCDKTFGRKDNLKTHERLHSGENYMCDVCGKCYSSSGSLLNHKRLHSGEKPFQCDVCSRRFISASILKDHLETHSDFKPHECNFCGRRFRQLRHLKSHIFTHTGEKPYQCEVCGMSFIKQMRLKQHVLAHTDKHLTRCSVCDKSFADPYYLKVHERLHTGEQPFPCDVCDKRFNTAISLKTHKQVHTGERLYRCCLCDKSFMHASTLKTHERTHTGEKPFECDVCKMQFAQSSHLSRHRNIHTGEKPFQCDQCGKSFRQSGDLKQHALRHAGTKPHVCNICGKSFVQASYLKVHIRIHTGMQPYTCNVCGRGCNNPSTLKVHKLIHTGEKPHRCDLCNKSFSQLYTLKVHKRVHTGETPFQCDICGKWFSDSGTLKKHKKIHAKANDKSESLKQSERNDNIVTAKQNDAETTKVDSNAEGAMVYLSVADNRSFTLFTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01511022;
90% Identity
-
80% Identity
-