Xxan017051.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754473.1:1186949-1189477[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2e-05 0.00041 21.1 2.7 1 23 205 227 205 227 0.98 2 19 3.8e-05 0.00077 20.3 1.3 1 23 233 255 233 255 0.98 3 19 0.0025 0.05 14.6 1.7 1 23 261 283 261 283 0.98 4 19 1.8e-06 3.7e-05 24.4 1.2 1 23 289 311 289 311 0.98 5 19 8.3e-05 0.0017 19.2 2.7 1 23 317 339 317 339 0.97 6 19 8.6e-05 0.0018 19.2 1.9 1 23 345 367 345 367 0.98 7 19 1.4e-05 0.00028 21.7 1.6 1 23 373 395 373 395 0.98 8 19 1.8e-05 0.00036 21.3 3.5 1 23 509 531 509 531 0.99 9 19 1.1e-05 0.00023 21.9 4.3 1 23 537 559 537 559 0.99 10 19 0.00018 0.0036 18.2 3.6 1 23 565 587 565 587 0.98 11 19 0.002 0.041 14.9 3.4 1 23 593 615 593 615 0.93 12 19 5.7e-05 0.0012 19.7 2.5 1 23 621 643 621 643 0.98 13 19 6.6e-06 0.00014 22.7 3.8 1 23 649 671 649 671 0.99 14 19 0.0002 0.0041 18.0 1.1 1 23 677 699 677 699 0.98 15 19 0.0038 0.077 14.0 4.9 1 23 705 727 705 727 0.97 16 19 1.8e-05 0.00036 21.3 1.7 1 23 733 755 733 755 0.98 17 19 2.3e-06 4.8e-05 24.1 2.3 1 23 761 783 761 783 0.98 18 19 3.7e-06 7.5e-05 23.5 2.3 1 23 789 811 789 811 0.98 19 19 4.9e-05 0.001 19.9 2.1 1 23 815 837 815 837 0.98
Sequence Information
- Coding Sequence
- ATGGATAATAATTCAACATTTCCGGCATACAGCGCCGTTGACGGAGTAAAAACTGTATCTAAGGGTGCTCAGGGCACATCTATAAAAATTGAGAATGAAGTGGGAAGATTTGCAAATTTTAACTCTGGAAATAACGAAGAAATGTCTacaaaattcgaaataaaaaacgagCCAATGGACGATAATGATTTTTTGATTTCCGTAGAGCATGCTAATAACACATCTGGAGATGGCGGAAATGAAATCGGTGGCGAGGACTCAAAAATCGAAATTGGTGACATTAAATTTGTTGAAGGCATTGACGCCAATTGGAGAGAGATTGAAGCTGCAAATGTGAACAAAGGTATCGAAGAAATGTcgttaaaatatgaaattaagGAGGAACCAATGGACTCTATTAACGATACTGTAAACGGTTTTTCTAAAGACAATAGTGAAGTCAGTTGTGAAGATTCAAAAATCGATGCTGGCCATTCTTCGGAAAAACCTGCAGGTCCGGACTCTTCTGATGTAGGGGGATATATTGAAACATCTGAAAGGCGGAACTATATATGTGACATATATATGGAGCGTTTGTCTAAATTAAACCATTTAGATACACGTAACAAACGAtttaagtgtgacgtttgtaataagtgtttctttaCATTGGGCGATTTAAATCGTCATGAACGTATACATACTGAAGAGAAACCTTATAAATGTGACGaatgtaataagagtttcaaaaacccatatattttaaaaaatcacacgAATATACATACGGGAGAGAAGCCTTATATGTGTGACGTATGTGAAAAATGTTTCCTTAGATGGAAcagtttaaaaattcataaaatgatacatactggtgagaaaccttataagTGTGATGTTTGCGATAAACGTTTCAACAGGCtggataatttaaaaattcacaagCGTGCACATACGGGTGAACAACCGTAtgaatgtgacgtttgtaaaaaatgtttcaatacaTCGACTACTCTAAAGGCCCATAAcatgatacatactggtgagaaaccacatcagtgtgacgtatgtaataaacgttttattttgTCATCAAGTTTAACAATTCACAAGcgtgtacatactggtgagaaaccacatcagtgtgacgtttgtaataaacgtTTTATTTCGTCATCAGGTTTAACAGTTCACAAGcgtgtacatactggtgagaaaccgtatataTGTGACGTAAATTGGCAAGAAATTGAATCTTCAAATTTAACCTCAGCCAATAAAAGCATCGAGGATATGtccttaaaatacaaaattaaagagGAACCAACGGACAGTTCGTTAATAATACCGGACAATAGTGAAGTCAGTTGTGAagattcaaaaatcgatactggcCACTCTTCGGGAAACACCGCAAGTCCGGGCTCTTCTGATGCAGGGGGGTATATTGAAACATCTGAAAGGCGGAACTATATATGTGACATTTATATGGAGCGTTTGTCTAAATTTAACGAGCTAGATACACGTAACACTGTTAacaaaccatatcagtgtgacgtttgtaacaagtgtTTCGTCACATCAAATAAATTGAAAGttcacaagcgtatacatacggGTGAAAAACCTTATAAATGTGACGTGTGtgataagtgtttcactgagtcaAGCAAGTTAAAGTCTcataaacgtatacatactggtgagaatctacaccagtgtgacgtttgttatAAGCGTTTCATTGTATCATCGCATTTGACAGCTCACAAACGcgtacatactggagagaaaccttaTACATGTGACGTTTGCGGAATGTGTTTTACTACATCGAACTGTTTACGTGATCATAAtgtgatacatactggtgagaaacctcatacgtgtgatgtttgtaataagcgtttcaACAGACCGGCACTTTTAAAATatcacaagcgtatacatacggGCGAGAAACCTTATAAATGTGACgtgtgtaataagtgtttcccTCAGTCAAGCTATTTAAAGCTTCATAAacgcatacatactggtgagaaactacaccagtgtgacgtttgtgacAAGCGTTTCATTGCATTAGCAAATTTCATTCGTCACAAACGCGtacatactggcgagaaaccgtataaatgtgacgtttgtgaAAAGTGTTTTACTTCGTGCACCAGATTAAATGCTCATAACATGatacatactggcgagaaaccatatcagtgtgacgtttgtaacaagtgCTTCGCTGACGCGGAAACTTTGAAAGTGCACAAGACtacgcatactggtgagaaatcatatgagtgtgacgtttgtaataagcgtttcTTTACATTGAGCAACTTAAAGCGTcataaacgtatacatactggagagaaaccgtataaatgtgacgtttgtgaaaagtgtttcactcagtctAGCAGTTTAAATGCTCACAAGCTGATTCATACTGATAAATATCAGTGTGAGGTTTGTAAACAACGTTTCACTCGGctagaaaatttaaatactcacaaacttaAACATTCTTGTGAGAAGCAATAA
- Protein Sequence
- MDNNSTFPAYSAVDGVKTVSKGAQGTSIKIENEVGRFANFNSGNNEEMSTKFEIKNEPMDDNDFLISVEHANNTSGDGGNEIGGEDSKIEIGDIKFVEGIDANWREIEAANVNKGIEEMSLKYEIKEEPMDSINDTVNGFSKDNSEVSCEDSKIDAGHSSEKPAGPDSSDVGGYIETSERRNYICDIYMERLSKLNHLDTRNKRFKCDVCNKCFFTLGDLNRHERIHTEEKPYKCDECNKSFKNPYILKNHTNIHTGEKPYMCDVCEKCFLRWNSLKIHKMIHTGEKPYKCDVCDKRFNRLDNLKIHKRAHTGEQPYECDVCKKCFNTSTTLKAHNMIHTGEKPHQCDVCNKRFILSSSLTIHKRVHTGEKPHQCDVCNKRFISSSGLTVHKRVHTGEKPYICDVNWQEIESSNLTSANKSIEDMSLKYKIKEEPTDSSLIIPDNSEVSCEDSKIDTGHSSGNTASPGSSDAGGYIETSERRNYICDIYMERLSKFNELDTRNTVNKPYQCDVCNKCFVTSNKLKVHKRIHTGEKPYKCDVCDKCFTESSKLKSHKRIHTGENLHQCDVCYKRFIVSSHLTAHKRVHTGEKPYTCDVCGMCFTTSNCLRDHNVIHTGEKPHTCDVCNKRFNRPALLKYHKRIHTGEKPYKCDVCNKCFPQSSYLKLHKRIHTGEKLHQCDVCDKRFIALANFIRHKRVHTGEKPYKCDVCEKCFTSCTRLNAHNMIHTGEKPYQCDVCNKCFADAETLKVHKTTHTGEKSYECDVCNKRFFTLSNLKRHKRIHTGEKPYKCDVCEKCFTQSSSLNAHKLIHTDKYQCEVCKQRFTRLENLNTHKLKHSCEKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -