Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754466.1:599983-603980[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.00058 0.012 16.6 0.6 6 23 2 19 1 19 0.96

2 23 0.056 1.1 10.3 2.2 1 23 64 86 64 86 0.99

3 23 0.0073 0.15 13.1 0.3 1 23 92 114 92 114 0.95

4 23 0.0003 0.0062 17.4 5.0 1 23 120 142 120 142 0.97

5 23 7.7e-06 0.00016 22.5 3.5 1 23 148 170 148 170 0.99

6 23 0.00059 0.012 16.5 0.6 1 23 176 198 176 198 0.98

7 23 6.9e-05 0.0014 19.5 1.9 1 23 204 226 204 226 0.96

8 23 1.8e-06 3.6e-05 24.5 1.7 1 23 232 254 232 254 0.98

9 23 4.4e-05 0.00089 20.1 0.3 1 23 260 282 260 282 0.96

10 23 0.0017 0.035 15.1 2.0 1 23 429 451 429 451 0.99

11 23 6.8e-05 0.0014 19.5 0.6 1 23 457 479 457 479 0.98

12 23 0.00025 0.0051 17.7 1.6 1 23 485 508 485 508 0.93

13 23 0.43 8.7 7.5 4.4 1 23 536 558 536 558 0.98

14 23 9.3e-07 1.9e-05 25.3 0.7 1 23 564 586 564 586 0.97

15 23 0.00013 0.0028 18.6 2.1 1 23 592 615 592 615 0.97

16 23 0.2 4.2 8.6 1.9 1 23 645 667 645 667 0.98

17 23 0.00066 0.014 16.4 0.8 1 23 673 696 673 696 0.92

18 23 0.0069 0.14 13.2 5.6 1 23 703 725 703 725 0.98

19 23 2e-05 0.00041 21.2 4.8 1 23 731 753 731 753 0.99

20 23 9.5e-05 0.002 19.0 0.4 1 23 759 781 759 781 0.97

21 23 3e-05 0.00062 20.6 4.8 1 23 787 809 787 809 0.98

22 23 7.4e-06 0.00015 22.5 0.1 1 23 815 837 815 837 0.97

23 23 1.7e-05 0.00035 21.4 1.8 1 23 843 865 843 865 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.00058	0.012	16.6	0.6	6	23	2	19	1	19	0.96
2	23	0.056	1.1	10.3	2.2	1	23	64	86	64	86	0.99
3	23	0.0073	0.15	13.1	0.3	1	23	92	114	92	114	0.95
4	23	0.0003	0.0062	17.4	5.0	1	23	120	142	120	142	0.97
5	23	7.7e-06	0.00016	22.5	3.5	1	23	148	170	148	170	0.99
6	23	0.00059	0.012	16.5	0.6	1	23	176	198	176	198	0.98
7	23	6.9e-05	0.0014	19.5	1.9	1	23	204	226	204	226	0.96
8	23	1.8e-06	3.6e-05	24.5	1.7	1	23	232	254	232	254	0.98
9	23	4.4e-05	0.00089	20.1	0.3	1	23	260	282	260	282	0.96
10	23	0.0017	0.035	15.1	2.0	1	23	429	451	429	451	0.99
11	23	6.8e-05	0.0014	19.5	0.6	1	23	457	479	457	479	0.98
12	23	0.00025	0.0051	17.7	1.6	1	23	485	508	485	508	0.93
13	23	0.43	8.7	7.5	4.4	1	23	536	558	536	558	0.98
14	23	9.3e-07	1.9e-05	25.3	0.7	1	23	564	586	564	586	0.97
15	23	0.00013	0.0028	18.6	2.1	1	23	592	615	592	615	0.97
16	23	0.2	4.2	8.6	1.9	1	23	645	667	645	667	0.98
17	23	0.00066	0.014	16.4	0.8	1	23	673	696	673	696	0.92
18	23	0.0069	0.14	13.2	5.6	1	23	703	725	703	725	0.98
19	23	2e-05	0.00041	21.2	4.8	1	23	731	753	731	753	0.99
20	23	9.5e-05	0.002	19.0	0.4	1	23	759	781	759	781	0.97
21	23	3e-05	0.00062	20.6	4.8	1	23	787	809	787	809	0.98
22	23	7.4e-06	0.00015	22.5	0.1	1	23	815	837	815	837	0.97
23	23	1.7e-05	0.00035	21.4	1.8	1	23	843	865	843	865	0.98

Sequence Information

Coding Sequence: ATGTGCGGTAaagattataaaacaaaaagtaaTTTGTTAAGACATTATCAAAGTCATATCAATAATCCAAACATTTCATTAACCGAAATTAAAAATCGGTTAACCGAGAACATACCGACAGAAtttgaagaaaagaaaaataaaaataatataaacgttCAGACTGTAAGTGAAACAGGAGAACACATTTACAAATGCTACATTTGCAAAGAGATACACGAAAACCAAGAAGAATTGATCAAACATTACAAAACGCACGATTCAACGCGTCCATATGTTTGCCCGCAGTGCGGTCAAAGATACAGGCACGGATATTTATTGAACGGACACGTCTTGGGACACAAAGGCTCGAAGCAATATTGCTGCGATGTATGTGGCAGATCGTACATGCATAAATACAATCTGACGATACATTATCGTCTGCACACTGGACTGTTGCCGTACGAATGCAAAGATTgtgataaaaaattcaaacattccACTCAGTTAGTTTTGCATCGAAGAGTGCATACTAAAGAAAAACCGTACATGTGTCCGCATTGCGGACTGAAAATGGCATATTCTTCCAACATGATCGAACATATTCGTACGCATACAAACAGGGTTCCGTTTAAATGTTCGATTTGTGAAAAgagtttttctacaaaaaaaacacttaaaggCCACGAGTTGAATCATACCGGTACAAagaaacatgtttgtgaatattGCAATAAAGCATTTAGAAAACCGTCTAACTTGAAGTTGCATGTGATGACACATACTGGAGATAAACCGCACGTTTGCGATGTCTGCGGAAAAGGATTCATACAACGAAAtgctttaaaaaatcatataattcAGCATAATGAAATGACAAATACTAatgtgAATAAATACGACGGCTGTCCTCAATCGCTGTGCTgcgattgtacaaaaaaaataaacgatgcATTTTTATTTCGAGAAAAATGTGAGAAATCGGAACAGTTTCTAGAaacatacaaaaacaaatgcgaACAGACCGTAGAAATAAAAACCGAGGATAATTCAGATGACAGGGAATTAACCAATCCAGTCGCagtattagaattaataaacaacGGCGATTGTAGTGAAACCGATTGCCTTTCTAAAAACGAGAGTGATATTTTTGACAATGACGATACGCCTATCGAAGAGACAAAAGAAGATCAGTTTGAAGATACAAAGAAATCGGAAAGGAAAGTTAGaccatataatttcaaaaacgttaacaaaaaagcTATTAACGTAGAAACGGTTAATGAAaatggtgaaaaaatatatcagtgttatttttgtaaaactatTTACGATACTCAAAAAGAACTAATTGAACATTATAGAACGCATAACAGCGAAAAGCCGTTCGTCTGTCCTCAGTGCGGTCACGGATTTAAACGCCCGTTTATGTTAACCGATCATCTCTCGATTCATTTAGGCATTAAGCCGTTCGAATGCGACCACTGCACTAAAAGTTACGCGTCGAAGTATTCGTTGTCTAAACACGTAGTGAGTGCCCACAAAGAacacaaaaaagagaaaaaagaaattataaaaatagaacCCGAACTCGAAACTGTTATGAAAAAcggtgaaaaaatatttcagtgcTTTTTCTGCAAGACTGTTCACAAAACACAAGACGAGCTAATCAAACATTACAAAGAACACGACCAAGAAAGACCGTATGTTTGCTCGATATGCGGTAAACAGTACAGCCGGCCTTCGCATTTAAACGCTCACTTGTTGCAGCATCAAAAAATCAAACCGCACCGATGCGAACTGTGCGGAAATTCGTATTCGGATCGATATTCGTTGCTGAAACATTTGCGTAAAATACACGGCAAAAATAAAGAAGAACTGAACATCGATCGATGGAATAACGATATCGTTCATATCGAGACGACGCAGGAAAATGGAAACAAAGTTTACGTATGTTATATATGTAAGAGCGAATGTGGAAATCAACAACAATTATTGGAGCATTATCAAACGCACGATCCAACTCGGCCGTACATTTGTCCTCAGTGCGGTCAACGATTCAAACGGCCGCACGTTTTGAACGATCACGTGCTCTTCAATCATTTGGGCGTTAAAAAACCGTTCGAATGCGACGTTTGCCACAAAGAATATTCGTGTAAGACTAACTTAACAGTTCACTATCGAACGCACACGGGAGACTATCCGTACAAATGCGAAGATTGCAGTAAGAAATTTAAACATTCGACCGAATTAAAAATGCATCGTAGAGTGCACACGAAAGAAAAACCGTTCATGTGTCCGTACTGCGGTAAAATGATGTCGATGTCGTCGCATCTGGCGGTACATATCCGAGCCCACACCGACGAACGGAGGCACAAGTGCACCCTGTGCGACAAAGCTTTCGTACGGAGTGAGTGCTTGAAAACGCATATGTTAACTCATACGGGAGTTCGAAATTATCCGTGCAAAGTTTGCGGTAAGGCGTTCTATAGGCCGAGCGCTCTGAAACTACATTCGATGATTCATACGGACGAACGACCGCACGTTTGCAAGTATTGTGGGAAAGGTTTCATTCAAAGACAGGCAATGAACACTCACATGAACACGCATGTTTAA
Protein Sequence: MCGKDYKTKSNLLRHYQSHINNPNISLTEIKNRLTENIPTEFEEKKNKNNINVQTVSETGEHIYKCYICKEIHENQEELIKHYKTHDSTRPYVCPQCGQRYRHGYLLNGHVLGHKGSKQYCCDVCGRSYMHKYNLTIHYRLHTGLLPYECKDCDKKFKHSTQLVLHRRVHTKEKPYMCPHCGLKMAYSSNMIEHIRTHTNRVPFKCSICEKSFSTKKTLKGHELNHTGTKKHVCEYCNKAFRKPSNLKLHVMTHTGDKPHVCDVCGKGFIQRNALKNHIIQHNEMTNTNVNKYDGCPQSLCCDCTKKINDAFLFREKCEKSEQFLETYKNKCEQTVEIKTEDNSDDRELTNPVAVLELINNGDCSETDCLSKNESDIFDNDDTPIEETKEDQFEDTKKSERKVRPYNFKNVNKKAINVETVNENGEKIYQCYFCKTIYDTQKELIEHYRTHNSEKPFVCPQCGHGFKRPFMLTDHLSIHLGIKPFECDHCTKSYASKYSLSKHVVSAHKEHKKEKKEIIKIEPELETVMKNGEKIFQCFFCKTVHKTQDELIKHYKEHDQERPYVCSICGKQYSRPSHLNAHLLQHQKIKPHRCELCGNSYSDRYSLLKHLRKIHGKNKEELNIDRWNNDIVHIETTQENGNKVYVCYICKSECGNQQQLLEHYQTHDPTRPYICPQCGQRFKRPHVLNDHVLFNHLGVKKPFECDVCHKEYSCKTNLTVHYRTHTGDYPYKCEDCSKKFKHSTELKMHRRVHTKEKPFMCPYCGKMMSMSSHLAVHIRAHTDERRHKCTLCDKAFVRSECLKTHMLTHTGVRNYPCKVCGKAFYRPSALKLHSMIHTDERPHVCKYCGKGFIQRQAMNTHMNTHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -