Xxan022703.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:18313435-18315570[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0071 0.15 13.1 7.9 2 23 148 169 147 169 0.97
2 20 4.6e-05 0.00094 20.0 3.6 2 23 176 197 175 197 0.97
3 20 6.3e-06 0.00013 22.7 1.0 1 23 203 225 203 225 0.99
4 20 5.4e-06 0.00011 22.9 5.0 1 23 231 253 231 253 0.99
5 20 1.5e-05 0.00031 21.5 4.1 1 23 259 281 259 281 0.97
6 20 8.2e-05 0.0017 19.2 3.4 1 23 287 309 287 309 0.97
7 20 2e-05 0.00041 21.2 4.2 1 23 315 337 315 337 0.97
8 20 2.6e-05 0.00053 20.8 2.1 1 23 343 365 343 365 0.98
9 20 0.0033 0.068 14.2 0.6 1 23 371 393 371 393 0.97
10 20 0.00017 0.0035 18.2 1.7 1 23 399 421 399 421 0.99
11 20 6.4e-05 0.0013 19.6 4.9 1 23 427 449 427 449 0.98
12 20 6.6e-05 0.0013 19.5 2.3 1 23 455 477 455 477 0.98
13 20 0.00076 0.016 16.2 0.1 1 23 483 505 483 505 0.96
14 20 0.00013 0.0026 18.6 1.1 1 23 511 534 511 534 0.97
15 20 0.002 0.04 14.9 0.7 1 23 540 562 540 562 0.99
16 20 6.5e-06 0.00013 22.7 1.7 1 23 568 590 568 590 0.98
17 20 7.2e-06 0.00015 22.5 4.5 1 23 596 618 596 618 0.99
18 20 0.0001 0.0021 18.9 3.0 1 23 624 646 624 646 0.99
19 20 5.7e-07 1.2e-05 26.0 1.4 1 23 652 674 652 674 0.99
20 20 0.00024 0.0048 17.8 1.6 1 23 680 702 680 702 0.99

Sequence Information

Coding Sequence
ATGGAAGAAGACCCGTCTCTGAATTCAGTAAACACAATaagtaatgaaatatttataaaaactgaaatCAAAGAAGAACCGATTGATAACAATTACCTGTATCCAACAGACTGTTCTAATGAAACAGTTACTCTATCCAACTGTGAGAATAGCGATTTCAACTGCGAAGATGGAAAGATTGGAGCTAAGGACACTAAACTAGAGGCAGGATCTGCCACTTCTAATTCAACAAATCAAACTAACGAAGTCGTGTTtataaaatccgaaatcaaggAAGAACCGACGGATAATTCCTTCGTATTTTTACCGGAATATGTCGAAAACACTGCGAATGCTTCGTCAAACGGCGCCGGCAATGAAATCAATCGCGACggcacaaaaacaaatattgatCAGACGTCAGATATACAGAATCATGTGCCTACTGGTGAGAAACTATTGAAGTGTGgcgtttgtaagaagtgttttcaTCAAATACACGATTTGAAGAAACACCGACGCGTCCATAAAGGCGATAAACACTGTCAGTGCAACGTTTGCGAAAAGACTTTCAAGTATACAAGCGATTTGTTACGTCACACGCGTATACACAGTAATGataaaccatatcagtgtgacatttgcgaGAAGCGTTTTACTCAGCAGGCTTTCTTAACAATCCACAAACGTGtacatactggcgagaaaccatatcagtgtgacgtttgtaaaaaatgcttttctaaatcggCTTATTTGAAAAGACACTATCGGATacataccggcgagaaaccatacaagtgtgacgtttgcaataagaGTTTCAGTCAAACGAGTCATCTAAAATCGCACAAACTCTTGCATACTGGCGATaagccgtaccagtgtgacgtttgtaataagtgttttatACAAACGAGTTCGCTGAAGTCGCACAAACTGTTGCATACCGGTGATAAACCGTATCATTGTGACGTTTGCGATAGGAGTTTTTATCAAGCGAGTCATCTGAAATCGCACATGTTTGTACATACTAGTGATAGACCCTTTCAATGCGACACGTGCGAGAAAAGTTTCAGTAATTCTATACGTTTGACAAGACATAAACGTATACACAGCGACGAGAGGCAATATccgtgtgacatttgtaatgcAATCTTTAATCAAAGGAATCTCTTATCAGTTCACAAGtgcatacatactggtgagaaaccttacgAGTGTGaggtttgtaaaaaatgctttgGTAGACCAGAAATTTTAAAGAGACATTATCGGGTTCACACAGGTCAAagaccatatcagtgtgatgtttgtaataagtgtttcaatcAAGAAGCTCATCTAAAGTCGCACAAACTtatgcatactggtgagaaaccttatcagtgtgacgtttgtaataaatgctTCGGTACATCTGTAATGTTGAGAACACACAATCGtgtgcatactggtgagaaaccgtatctgTGTGACGTTTGTGGAGCGTCCTTTCCTACAAGATCACTTTTTGCTGTTCACAATCGCGTTCATTCTAGTGAGACatcatatcagtgtgacgtatgTAATAAGAGTTTTAATCAAATGATTTATCTGAACATACACAAACGCAACATGCATACTGATGATAAaacttatcagtgtgacatttgcgaGAAGAGTTTCTTAGATACATCGCGTTTGATAAGTCACAAACGTATACAcactggtgaaaaaccatatcagtgtgacgtatgTAATAAGAGATTTATTCAAAAGGTTCAGTTGACAAATCATAAGCGTTtacatactggcgagaaaccatatcagtgtgagatttgtaaaaaatgctttCGTATGTCAGAATCTTTGAAGAAACACACTCGCGTACATacgggtgagaaaccgtaccagtgtgactattgtaaaaactgctttcaaaCGTTATCGAATTTAATTGTTCACACTCGAGtgcatactggagagaaaccgtttaagtgtgacatttgtgaaaaaagtttcactgaTAAAAGAAATTTGGTTAGTCATAGACgtatacataccggtgagaaaccatatcagtgtgacgtttgcaaaaaGTGGTTTATTTCACAATTTAATTTGAAGAGGCACAGTCGCGTGCACTCTCAAAAACGGAATAAAACGCTGCCCTAG
Protein Sequence
MEEDPSLNSVNTISNEIFIKTEIKEEPIDNNYLYPTDCSNETVTLSNCENSDFNCEDGKIGAKDTKLEAGSATSNSTNQTNEVVFIKSEIKEEPTDNSFVFLPEYVENTANASSNGAGNEINRDGTKTNIDQTSDIQNHVPTGEKLLKCGVCKKCFHQIHDLKKHRRVHKGDKHCQCNVCEKTFKYTSDLLRHTRIHSNDKPYQCDICEKRFTQQAFLTIHKRVHTGEKPYQCDVCKKCFSKSAYLKRHYRIHTGEKPYKCDVCNKSFSQTSHLKSHKLLHTGDKPYQCDVCNKCFIQTSSLKSHKLLHTGDKPYHCDVCDRSFYQASHLKSHMFVHTSDRPFQCDTCEKSFSNSIRLTRHKRIHSDERQYPCDICNAIFNQRNLLSVHKCIHTGEKPYECEVCKKCFGRPEILKRHYRVHTGQRPYQCDVCNKCFNQEAHLKSHKLMHTGEKPYQCDVCNKCFGTSVMLRTHNRVHTGEKPYLCDVCGASFPTRSLFAVHNRVHSSETSYQCDVCNKSFNQMIYLNIHKRNMHTDDKTYQCDICEKSFLDTSRLISHKRIHTGEKPYQCDVCNKRFIQKVQLTNHKRLHTGEKPYQCEICKKCFRMSESLKKHTRVHTGEKPYQCDYCKNCFQTLSNLIVHTRVHTGEKPFKCDICEKSFTDKRNLVSHRRIHTGEKPYQCDVCKKWFISQFNLKRHSRVHSQKRNKTLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-