Xxan022808.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:19251743-19255803[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 8.6e-05 0.0018 19.2 3.1 1 23 272 294 272 294 0.99
2 24 0.25 5.2 8.2 0.4 1 20 300 319 300 321 0.92
3 24 0.0001 0.0021 18.9 4.5 1 23 328 350 328 350 0.99
4 24 0.0025 0.052 14.5 2.2 1 23 354 376 354 376 0.96
5 24 0.0057 0.12 13.4 4.3 2 23 383 404 382 404 0.96
6 24 0.00056 0.011 16.6 2.8 1 23 410 432 410 432 0.98
7 24 1.6e-06 3.2e-05 24.6 3.8 1 23 438 460 438 460 0.99
8 24 6.9e-06 0.00014 22.6 0.9 1 23 466 488 466 488 0.98
9 24 0.0009 0.019 15.9 2.2 1 23 494 516 494 516 0.99
10 24 0.023 0.47 11.5 6.3 1 23 522 544 522 544 0.97
11 24 3.9e-05 0.0008 20.2 6.0 1 23 550 572 550 572 0.98
12 24 2.1e-06 4.4e-05 24.2 1.7 1 23 578 600 578 600 0.99
13 24 0.0013 0.027 15.5 1.8 1 23 606 628 606 628 0.99
14 24 9.6e-05 0.002 19.0 4.0 1 23 634 656 634 656 0.98
15 24 0.01 0.21 12.6 3.5 2 23 662 683 661 683 0.94
16 24 1.7e-05 0.00036 21.3 6.0 1 23 689 711 689 711 0.98
17 24 3.7e-05 0.00076 20.3 1.1 1 23 717 739 717 739 0.99
18 24 1.2e-06 2.5e-05 25.0 2.8 1 23 745 767 745 767 0.98
19 24 7.6e-05 0.0016 19.3 1.7 1 23 773 795 773 795 0.98
20 24 5.5e-06 0.00011 22.9 1.7 1 23 801 823 801 823 0.99
21 24 0.00011 0.0022 18.8 3.9 1 23 829 851 829 851 0.98
22 24 0.003 0.062 14.3 1.9 1 23 857 879 857 879 0.99
23 24 5.5e-05 0.0011 19.8 5.2 1 23 885 907 885 907 0.97
24 24 0.0018 0.036 15.0 0.1 1 23 927 950 927 950 0.93

Sequence Information

Coding Sequence
atggagGAAGCATACGTAAATAGTTTCGGCTTGAGTTCAATGTGTCGATTATGCTTATCAAGTGGCGATGCAACGTTAGATATATTTGCCTTTTCAACAGAACTAACGAACAAAATAGCTGATGTAATTATGAAGTGTGCTCCTGTTCAGATAACGAGAGGCGATGAGTTACCGAATTTCATCTGCCAATCATGCTGCACTCAACTGGAGAAAAGCCACCAGTTCCAGAATCAAATAGTGCAGTCAGACAAAACCCTGCGACGCTATCTACAGCAACTACGAACTTCTAACCAACAAGTCAAAGCTGGGTCGGTTCAGGGACAGTCTGAGAATTTTGTAATCCTGAACACCGACACAAACCTCACCGTAAATTGTGACTCTTTAGAACTACAAGAGGTGTTTGTTATTGATATCGATTTGAATGAAGAAGAGCTTACAGACGTTGCTTTAGCATGCAAAACTAACGAGGAAAcgtgttcaaaattaaaaattaaagaaacacCGACAGATGACGATTCAGTAATTTCAACGGATTACACTGATAACTTAACAGTATCTGACGATGACAACGGTATTGATATCGAGTGGGAAAAATTAGAGGTTGTAGAACAATCGGAGAACCCCACAGGTCTTGTTGATATAACAGAGGATCATGATGAACGTGAAGAAGGAAATGAAAATACATTCCGCGGATCAGGTGCTTTGATAAATCATACTGATAAGAAATCATATGAATGTGACCTCTTTAAAAGGAGGTACTTATCTATGTGCGCTTTGAACAGGCATAAACGTGAGCATACTGACGAGAAAcagtaccagtgtgacgtttgtaataagtgtttcaaacGTTCGAGTATCTTTGAAGTACACCAGCGAATACATTCTGGCGTGAGACCACATGAATGTGGTATCTGCAAAATGCGTTTCAGAACTATAATCGCATTGGAAGATCATAAGTGTGCAcctactggtgagaagccgtataagtgtgacgtttgtaatcaGTGTTTCGACCAACAGATTCATTTGAGCGTACACCAGCGTTCACATGAGACACCGTACGACTGTGACAACTGTAAACAGAGTTTCACATCTGAGGATACTTTTAACAGGCATAAGTTTGTGCATACTGACGAGAAACCACTCCAGTGTGACGtgtgtaataaatgtttcaaaaattcGTGTGACCTTGGAGGACACCGGCGATTACACTGGGATGAGAAACCACATCAATGCGATATGTGTAAAAAGCGTTTCAGCTCTACAATCGCTTTGGAAGTTCATAAACGTcgacatactggtgaaaaaccatacaagtgtgacgtttgtaataagtcttTCAACCAATCTGGTCATTTGAAAatacacaaacgcacacataccggtgagaaaccgtacgtATGTGACGTCTGTAAAAAGAGTTACATATCTAAGGACTCTTTGAAAATTCACCAGCGTAATCActctggtgagaaaccataccagtgtgacgtttgtagtaaATGTTATACAAGTTCAAGTATCCTTCGAGGACACCAGCGAATACACTCTGGTGAGAAACCACATCAATGTGATatgtgtaaaaagtgtttcagatCTATACTTACTTTGAAAATTCATAAACGTCTACATACCGGTGAAAAACCAtttaagtgtgacgtttgtaataagtgtttcaaccAACGGATTCATTTACGCGTACACCAGCGTTTACATACCGGTGAGACACCGTACGtatgtgatatttgtaaaaagaGTTACAGATCTAAGGAAACTTTGAAAACTCATCAACGTATACACTCTGGCGCCagaccgtaccagtgtgacgtttgtagtaGATGTTTTAAAAGTTCAGGTATCCTTCGAGGTCACCAGCGAGTACACTCTGgcgagaaaccataccagtgtgacgtttgtaataaatgttttaaaagttCAAGCATCCTTCGAACTCACCAGCGACTACACTTTGATAAGAAACTTGAATGTGATAtctgtaaaaagtgtttcagatCTATAACCGATTTGGAAGATCATAAACATCTACATACAGGCGAGAAACCAttcaagtgtgacgtttgtaataaatgtttcaaccAATCTGCTCATTTGAGACGACACCAGTATGTGCATACTGGTGTGAAACCATATGAATGTAACCTTTGTAATAAGAGATTCAGCGCATCTGACCGTTTGCAAACACATATCCGTAgccatactggtgagaaaccatacatgTGTGACGTTTGTGGTAAGTGTTTCAAATCAAATGATGCTTTGAGAGCACACCATCGTGTACATGTTGGTGAGAAACCATTTAAAtgcgacgtttgtaataagagtttcagccGATATGGTGTTTATAAAATACATCAACGCTTACATACTGGGGAAaagccgtaccagtgtgacatttgtaataagtgttttgcCGATTTAAGTACGTTGAGAGGACACTACCGTGTACATTCTGGTGAGAGACCATATCAGTGTGTcgtttgcaataaaaaattcacCACAAACTGTGCTTTGACAAATCACCGGCGcctacatactggtgagaggccgtatcagtgtggcgtttgtagTAAGAGTTTTAGCTGTTCAGGTGGTTTGTTAAAACACAAGCGcgtgcatactggtgagaaaccgcatcagtgtgacgtttgtaataagtgtttcggcACTCCAGGTCATTTAAAAAGACACCGGCTCATACATACTCGAAATAAGCGCCTCCCAACGCATTTAACAGGAGCTCATAAAAAATCTGTGATTTACAAGTGCGGAGTCTGCGATGAGACATTTCAAACGAGAAGTGAAGTGGATAGACATATTGAAGATTTACACAATGTTTCCGAGTAA
Protein Sequence
MEEAYVNSFGLSSMCRLCLSSGDATLDIFAFSTELTNKIADVIMKCAPVQITRGDELPNFICQSCCTQLEKSHQFQNQIVQSDKTLRRYLQQLRTSNQQVKAGSVQGQSENFVILNTDTNLTVNCDSLELQEVFVIDIDLNEEELTDVALACKTNEETCSKLKIKETPTDDDSVISTDYTDNLTVSDDDNGIDIEWEKLEVVEQSENPTGLVDITEDHDEREEGNENTFRGSGALINHTDKKSYECDLFKRRYLSMCALNRHKREHTDEKQYQCDVCNKCFKRSSIFEVHQRIHSGVRPHECGICKMRFRTIIALEDHKCAPTGEKPYKCDVCNQCFDQQIHLSVHQRSHETPYDCDNCKQSFTSEDTFNRHKFVHTDEKPLQCDVCNKCFKNSCDLGGHRRLHWDEKPHQCDMCKKRFSSTIALEVHKRRHTGEKPYKCDVCNKSFNQSGHLKIHKRTHTGEKPYVCDVCKKSYISKDSLKIHQRNHSGEKPYQCDVCSKCYTSSSILRGHQRIHSGEKPHQCDMCKKCFRSILTLKIHKRLHTGEKPFKCDVCNKCFNQRIHLRVHQRLHTGETPYVCDICKKSYRSKETLKTHQRIHSGARPYQCDVCSRCFKSSGILRGHQRVHSGEKPYQCDVCNKCFKSSSILRTHQRLHFDKKLECDICKKCFRSITDLEDHKHLHTGEKPFKCDVCNKCFNQSAHLRRHQYVHTGVKPYECNLCNKRFSASDRLQTHIRSHTGEKPYMCDVCGKCFKSNDALRAHHRVHVGEKPFKCDVCNKSFSRYGVYKIHQRLHTGEKPYQCDICNKCFADLSTLRGHYRVHSGERPYQCVVCNKKFTTNCALTNHRRLHTGERPYQCGVCSKSFSCSGGLLKHKRVHTGEKPHQCDVCNKCFGTPGHLKRHRLIHTRNKRLPTHLTGAHKKSVIYKCGVCDETFQTRSEVDRHIEDLHNVSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-