Xxan022759.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:19021412-19026065[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.052 1.1 10.4 1.0 1 21 222 242 222 243 0.95
2 23 0.0013 0.027 15.4 3.9 1 23 250 272 250 272 0.99
3 23 0.0012 0.024 15.6 5.2 1 23 278 300 278 300 0.98
4 23 7.5e-05 0.0015 19.4 4.6 1 23 306 328 306 328 0.99
5 23 2.9e-06 6e-05 23.8 1.0 1 23 334 356 334 356 0.99
6 23 2.5e-06 5.2e-05 24.0 1.2 3 23 364 384 363 384 0.97
7 23 2.7e-05 0.00055 20.8 4.5 1 23 390 412 390 412 0.98
8 23 8.8e-05 0.0018 19.1 3.4 1 23 418 440 418 440 0.99
9 23 6.7e-05 0.0014 19.5 1.4 1 23 446 468 446 468 0.97
10 23 0.00043 0.0088 17.0 0.4 1 23 474 496 474 496 0.99
11 23 7.7e-05 0.0016 19.3 4.2 1 23 502 524 502 524 0.98
12 23 1.1e-05 0.00022 22.0 1.4 1 23 530 552 530 552 0.99
13 23 0.42 8.6 7.6 1.4 1 12 558 569 558 571 0.92
14 23 0.0044 0.09 13.8 2.2 1 21 747 767 747 768 0.95
15 23 0.52 11 7.3 6.7 1 21 775 795 775 797 0.96
16 23 0.00012 0.0025 18.7 0.4 1 23 803 825 803 825 0.98
17 23 1.9e-05 0.00039 21.2 2.9 1 23 831 853 831 853 0.98
18 23 4.2e-07 8.7e-06 26.4 2.4 1 23 859 881 859 881 0.99
19 23 9.4e-07 1.9e-05 25.3 1.9 1 23 887 909 887 909 0.98
20 23 3.4e-07 7e-06 26.7 2.0 1 23 915 937 915 937 0.99
21 23 0.00033 0.0068 17.3 1.3 1 23 943 965 943 965 0.98
22 23 7.6e-05 0.0016 19.3 4.3 1 23 971 993 971 993 0.99
23 23 9.8e-05 0.002 19.0 3.0 1 23 999 1021 999 1021 0.98

Sequence Information

Coding Sequence
ATGGAAAACATATCATTAcatgaaaaaattattagtgGAGTGTGTCGTTTGTGTTTATCTGGCGACGGAGCATTAATTGATATGTTCTCGTTTTCACCGGAACTCGATAGTCAGATCGCAGATGCTGTCACAGAATGCACTTCTGTTAACGTAGAGAAACATATTAAATTGCCTAGAACTATATGTGAATCCTGTTACACACAACTCGTCAAAACGCAGATTTTTCAAAGACAGGCTCTTCAGTCTGATAAAACGCTGCAGTTGTATCTGAAACAATTGCAAGATGACGATCAGCAAACATTACTTCCAGATATTAGTGGAAAATGTCTTGACACTAATGTTGCTGAACAGGACAGCGGAGATAATAATACCAACTGTGAAGATATAAAGCCTGAACTTAAATATTACGAAAGCGGTTATGAAGAATACAAAATGGATATTGTAGATAATAAGGTTGATCCATTGGACTCTGGACCTGCGATGAAGGATCTTCATACGACTAGCAAAGACTCTCTTTTTAATCCTAATCTGATTGTAAAGTCCGAACCAATTATAAATGATACTGATCAGTTTGGCATTAATACCGAAGTAACTGATTTCGTCCCAAGTAAGACGATCATAAAATCGGAGAACGTAATTACCACCGATAAAATTGTAGCGTCATATCAGTGTGACGCATGTGAAAGATGTTTCAAAAATCTAGATATTCTCAGAAAACATCAGTCTGTATGTACTGGTGAAAAGAGATTTCAGTGCGACGTTTGTACTAAGAATTTCAGCTGTTCAAGTAAATTAAAAGTTCATCAACGtgtacacactggtgagaagccatatcggtgtgacgtttgtaataagtgtttcagccaGTCATGCGTTTTGAAGATGCACGAACGTGTGCATACTGACAAAaaaccatacaagtgtgacgtttgtaataagtgtttcatgaCAAATAGTCGTTTGAACAGTCACCAGCGATTACATACAGGTGACAAAcaatatcagtgtgacgtttgtaataagcgttttAATATTGCGggaaatttgaaaaaacatcaACGATCACATACCGGTGAGAGATCGAATccgtgtgacgtttgtaatagaAGTTTCAGCAATTCAAGCAATTTGGCAAAACACAAGAaaacacacactggtgagaagccgtaccagtgtgacgtttgtaataagtgttttatGAGATCAGCTCATTTGAAAAGTCATCAACTCATACATACGGGTGAGAAGCCGTATCGGTGTGacttttgtaataagagttttagCCAGTCAGGTATTTTCAGAAGACACCagcgcacacatactggtgagaagccgtataagtgtgacgtttgcggcAAGTGTTTCACGACAAAGGGTGTGTTGGGAACACACCAACttttacatactggtgagaagccatatcagtgtgacatttgtaatatgTGTTTCACCTTAGCGGCTGGTTTAAAAGGGCACCAGCAAGTACATGCTGGCGGGAAACGGTTtcgatgtgacatttgtaatcaTTGTTTCAGTGATGTAAGTAGTTTGAGTAATCACCAGCgtatacataccggtgagaaaccatatcagtgtgacgtttgtgagGCGAGATTCAGGAAACTGTATAATTTGAGAAAGCATCAAcgtgtacatactggtgagaagccatatcagtgcGATGGCTGCAATAAATGTTATTCCCAGTTGGTAGTGAAACATATTAACTTGCCTACAGCTATATGTGAGTCTTGTTACATGCAACTCGTCAAAACGCAGAGTTTTCAAAGACAAGCTCTTCAATCGGATCAAACACTGCAGTTGTATCTGAAACAATTGCAAGATGACGACCAGCAAAACATACATGGAAGTTCACTATCGCTTCCAGATAGTAGTGGGAATCATTTTATTGAAACTAACGTTGCCAAACTTGCTGAGGAGGATAACAGTACCAACTGTGAAGAAATAAAGCCTGAAGTTAAATTTTTCGAGAGCGCTTGTGAAGAATTTGAAATGGATGTTGTAGAAAAGAAAGTTGATCCATTAGAAACAGGATCACATACCAAATGGGATGACAAAGATTCGACTTTTAATCCTAACCTGATCGTAAAGTCTGAACCAATTATAAATGATAGTGAACGGTTGGACATTGATACTGAAGTATTAACTGATTTCGTGCCAACTCAGAAGTTTATAAAATCGGAGAACAAAAGTGCCAATGATAAAATTGTAGCgtcatatcagtgtgacgtgtgTGAAAAATGTTTCAGCAATTCAGATATTCTGAGAGAACACCAGTGCGTAGATACAGGTGAGAAGGGGTTTCAGTGCGGCGTTTGTACTAAAAATTTCAGCTGTTCAAGTAAATTGAAAGTACATCAGCGTTgccatactggtgagaaaccatatcggtgtgacgtttgcaataagagtttcagccaatcaggtattttaaaaatacacgaACGcgttcatactggtgagaaaccatatcagtgtgacgtttgtaataagtgtttcacgaCAAATAGTGATATGGGAAATCACCAGCGCCTACATACAGGTGAAAAGCCATATCGATGTGACGTCTGTAATAAAACATTCAGTATTTCTAGTAATCTGAAAAAACATCAGCGTTCTCATACTGGTGAGAGGCCGTAccggtgtgacgtttgcaatgaGAGTTTTAGCAGTTCGAGTAATTTAAAGAAACACAACAGATCtcacactggtgagaagccgtaccagtgtgacgtttgtaataagagtttcaagGACTTGAGTAATTTTAAATCTCACCAgcggatacatactggtgagaagccgtatcagtgtgacgtttgtcatAAGAGTTTCAGCCAGTCAGGTATATTGAGAATACACGAACGcttacatactggtgagaaaccatataagtgtgacgtttgtagtaaGTGTTTTAAGACAAAACGTGATTTGGGAAGCCACCAACGGTTACATAGTGCTCCGAAACTAtaccaatgtgacgtttgtaaaaagagTTTTAAAGATTTACGTTATTTCAAATCACACCAGAAGGCTCATATTGGTGAGAAACCGTCTCCAGTGTGA
Protein Sequence
MENISLHEKIISGVCRLCLSGDGALIDMFSFSPELDSQIADAVTECTSVNVEKHIKLPRTICESCYTQLVKTQIFQRQALQSDKTLQLYLKQLQDDDQQTLLPDISGKCLDTNVAEQDSGDNNTNCEDIKPELKYYESGYEEYKMDIVDNKVDPLDSGPAMKDLHTTSKDSLFNPNLIVKSEPIINDTDQFGINTEVTDFVPSKTIIKSENVITTDKIVASYQCDACERCFKNLDILRKHQSVCTGEKRFQCDVCTKNFSCSSKLKVHQRVHTGEKPYRCDVCNKCFSQSCVLKMHERVHTDKKPYKCDVCNKCFMTNSRLNSHQRLHTGDKQYQCDVCNKRFNIAGNLKKHQRSHTGERSNPCDVCNRSFSNSSNLAKHKKTHTGEKPYQCDVCNKCFMRSAHLKSHQLIHTGEKPYRCDFCNKSFSQSGIFRRHQRTHTGEKPYKCDVCGKCFTTKGVLGTHQLLHTGEKPYQCDICNMCFTLAAGLKGHQQVHAGGKRFRCDICNHCFSDVSSLSNHQRIHTGEKPYQCDVCEARFRKLYNLRKHQRVHTGEKPYQCDGCNKCYSQLVVKHINLPTAICESCYMQLVKTQSFQRQALQSDQTLQLYLKQLQDDDQQNIHGSSLSLPDSSGNHFIETNVAKLAEEDNSTNCEEIKPEVKFFESACEEFEMDVVEKKVDPLETGSHTKWDDKDSTFNPNLIVKSEPIINDSERLDIDTEVLTDFVPTQKFIKSENKSANDKIVASYQCDVCEKCFSNSDILREHQCVDTGEKGFQCGVCTKNFSCSSKLKVHQRCHTGEKPYRCDVCNKSFSQSGILKIHERVHTGEKPYQCDVCNKCFTTNSDMGNHQRLHTGEKPYRCDVCNKTFSISSNLKKHQRSHTGERPYRCDVCNESFSSSSNLKKHNRSHTGEKPYQCDVCNKSFKDLSNFKSHQRIHTGEKPYQCDVCHKSFSQSGILRIHERLHTGEKPYKCDVCSKCFKTKRDLGSHQRLHSAPKLYQCDVCKKSFKDLRYFKSHQKAHIGEKPSPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-