Xxan005360.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754466.1:7544962-7548819[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 3e-05 0.00062 20.6 2.0 1 23 106 129 106 129 0.97 2 27 8.3e-05 0.0017 19.2 1.0 1 23 135 157 135 157 0.98 3 27 0.00047 0.0096 16.8 2.3 1 23 163 185 163 185 0.97 4 27 0.0077 0.16 13.0 5.2 1 23 191 213 191 213 0.98 5 27 0.0042 0.085 13.9 0.8 2 23 220 242 219 242 0.96 6 27 0.0025 0.051 14.6 0.8 2 23 257 279 256 279 0.97 7 27 0.0027 0.056 14.4 2.6 1 23 294 317 294 317 0.97 8 27 7.6e-06 0.00015 22.5 3.0 1 23 323 345 323 345 0.98 9 27 7.8e-05 0.0016 19.3 0.1 1 23 351 373 351 373 0.98 10 27 9.6e-06 0.0002 22.2 1.2 1 23 379 401 379 401 0.96 11 27 0.00099 0.02 15.8 5.0 1 23 407 429 407 429 0.98 12 27 0.0008 0.016 16.1 1.0 1 23 435 457 435 457 0.96 13 27 0.00016 0.0033 18.3 0.5 1 23 463 485 463 485 0.98 14 27 0.89 18 6.5 10.6 1 23 491 513 491 513 0.98 15 27 9.6e-05 0.002 19.0 2.7 1 23 519 541 519 541 0.99 16 27 0.0028 0.056 14.4 4.7 1 22 630 651 630 651 0.96 17 27 4.3e-05 0.00089 20.1 0.8 1 23 655 677 655 677 0.98 18 27 0.0032 0.065 14.2 0.8 1 23 683 705 683 705 0.97 19 27 0.0009 0.018 16.0 4.2 1 23 711 733 711 733 0.98 20 27 0.00068 0.014 16.3 4.5 1 23 739 761 739 761 0.94 21 27 0.00047 0.0095 16.9 1.6 1 23 767 789 767 789 0.99 22 27 0.0007 0.014 16.3 4.4 1 23 794 816 794 816 0.96 23 27 4.8e-06 9.8e-05 23.1 1.0 1 23 822 844 822 844 0.99 24 27 1.3e-05 0.00028 21.7 2.6 1 23 850 872 850 872 0.98 25 27 0.0021 0.043 14.8 3.8 1 23 878 900 878 900 0.98 26 27 0.0027 0.055 14.5 5.6 1 23 906 928 906 928 0.98 27 27 0.042 0.87 10.7 0.6 1 23 934 957 934 957 0.93
Sequence Information
- Coding Sequence
- ATGGCAGTTCAATCGGAAATCACGCTGCACCGTTATATGAAAAAATCAGAAGCCTGTCAAACAGGTGATCGCGTTGAACCCGATCAACAAACGGGATCGGCTGattgtcaaataaaatctgAAGCAACAGCTGAAGACGATGAAACTGAAAACTTAGATCATCAAGAAACGGAAATGATTTTCATTCCAACACTAGAATCCAATATAAAGGAAGAAGCGTATGAGGACACAGATGAGGACAGTAACATTGATTGTGATGTTGATGATAATGAAGAAACAAAGTTCGACCCGTCGTCCGATTTAAACGAAAAGCCGTATCATTGCGAAGTGTGTCCAAAacgtttttcccaaaaaatatacctaagtCGACACATACAGCGTATTCATGCCGTCGAGAAACCGTTTAAATGCGATCTTTGCGACCAGTCTTTTTCAAAACCGTATGCCCTGACGTATCACAAACAAGTCCACAACAGCAAAAACATATACAAATGCGAATCTTGCGACATGTGCTTCAATCGAAAATGGAGTTTAATAAGACACAACCTCATCcatacaggtgagaaaccgTTCCAGTGCAATttctgtaaaaagtgtttcaatcAAAAAGCTATACTGAACGAACACAAACGTATGCATGCGAAGGATTGTCCGTTACAGTGTGAACATTGCGACGAAACATTTATCGACGACAAACAATTAGACGAGCACAAGAACACCGAACACGAAGAGTCAAGCAAACTTGCACATACTGGGGATAGTTCTGTACGATGTGAAGTTTGCAACGAGAGCTTTACTGACGTCACGCACTTGGACGAGCACAAAAAAACCGTACACGAAGGCATTTCTGTCGACAAGTCGGAATCTAGCGGTAAACCTTACATGTGTGACGTTTGCAGCAAATGTTTTCCGAAACTCGTTTATTTATCGCGTCACAAGCAGCGCATTCACGCGCTAGAGAAACCGTACAGCTGCGACGATTGTGACAAATCCTTTTCTCAGCAGTGTGCGCTGACTTATCACAGACGCATTCACAACGACAAAAAAACTTATGTCTGCAACGTTTGCGGAATGGGTTTCATTCGTCAGTGGGGTCTGATGCGTCACAAAGAGACACACGGCACCACCAAGGGCTTCAAGTGCCCCGTCTGCGATAAGAGTTTTGCACACAATGCCACGTTGCGCGCTCATAAATTCATACATACCGGGATTAAACCGCATCAGTGTGACGTGTGCAGCAAATGCTTTACAATGAAACAACAGCTGATCGAACATAAACGTATCCATACCGGGGAAAAACCGTATCTGTGCAATTTTTGCAGTATGCGATTTGCGCTCAAGGGCCAGTTGAACAGTCATATTCGAACACATACGGGAGAAAAACCGTATCCGTGTGATATTTGTGACGCGCGATTCGCGCATCTGATCAGTTTGAAGGTTCATAAACGTACGCATACGGGCGAACGACCGTATTgctgtgacgtttgcaataagaCTTTCGCGCAGAGGTGTCACTTTATATGTCAtcaacgtatacatactggcgagaaaccgTATAGTTGTGAAGTGTGCGGCAGTTGTTTTATCGATAGACGTGGATTGAAACGGCATAAACGAACACATAcggACAAAGCTGTAGAGTCCGAACgaactttaaaaaactatttaaataaaacaaacccGACAAACAGTATATGGATACCTGAAAATACTACAAACACGATTCCGTTTATTAAATCCGAGCTGGTTGAATGCGTTTTCCAAGAAAACGTCAAATTAGAGCCGTTTGAGTTAGAAAATCCAGACGATTCCGATTCTTCTCCTGACGCTTCGAAAGAATCGTCCATCGAAGATAAAAAAGATACAGGCGTAAAAAAACCAACAATACACAAGTGCAAAGACTGTTTCAAACGATACAGAGTCGAAGACAACTTAAAAAAGCACATTTGTACACGTGGGCTCTATCAATGTAAAGAATGCGACAAAagttttccattcaaagataGGTTAGAAATTCATAATCGGATACATACCGGAGATAAACCGTACGTGTGTGATGTTTGTAGCAAAGGATTTATATCGAAAACACGACTGAACTTACACAAAAAATTGCACAACTCAATAAAACCATTCGTGTGCACGCTTTGTCAAAAAAGATTTCATACCAAGCCCGAACTGAAGAGCCACAGTCGTACGCATTCCGGGGAGCGACCATATAAATGTCCACACTGCGAGAAACGGTTCAAGTTCAGAAACAACCTGAACTTGCACAAAGTTCAACACACAACCGACATTCCTTTCAAGTGCGCCACTTGCAACGAATCATTCGATCGACTTTGGAAACTCACTACTCACAAACGTATGCATGTTGGTGATAAATTCAAGTGTGAAGTTTGCAGCAAgtgttttaataacaaaacaagCTTGCTAAAACACTCTacaatacatactggtgagaaaccgtttcaGTGTGAACTGTGCAGTGTTCGGTTTCGTCAAAAAAGCGGCTTGACCAATCATATGCGCGTACATTCCGGGGAAAAACCGCACCAGTGCGAAGTTTGCAATAAAAGCTTTTCTCAGCTGTATAGTTTGAATGAACATAAACgaatacataccggtgagaaaatATTTCAGTGTGATCTGTGCCAGGCGAGATTTACCCATCGGTATAGTTTGAGAATTCATAAACTGAGACATGCAGGAGATAAACCACATAAATGCAACGTTTGCGAGAAGAGGTTCTATCAAAAAGGCCGATTGGTCGAGCACCATCGAACACATACGGGAGAAAAAGCTTTTCAGTGCGACATTTGTGCTAATCGATACGCCGATAAGCGGGGTCTAAAAAGACATAAAACACAAATACATCCTTAA
- Protein Sequence
- MAVQSEITLHRYMKKSEACQTGDRVEPDQQTGSADCQIKSEATAEDDETENLDHQETEMIFIPTLESNIKEEAYEDTDEDSNIDCDVDDNEETKFDPSSDLNEKPYHCEVCPKRFSQKIYLSRHIQRIHAVEKPFKCDLCDQSFSKPYALTYHKQVHNSKNIYKCESCDMCFNRKWSLIRHNLIHTGEKPFQCNFCKKCFNQKAILNEHKRMHAKDCPLQCEHCDETFIDDKQLDEHKNTEHEESSKLAHTGDSSVRCEVCNESFTDVTHLDEHKKTVHEGISVDKSESSGKPYMCDVCSKCFPKLVYLSRHKQRIHALEKPYSCDDCDKSFSQQCALTYHRRIHNDKKTYVCNVCGMGFIRQWGLMRHKETHGTTKGFKCPVCDKSFAHNATLRAHKFIHTGIKPHQCDVCSKCFTMKQQLIEHKRIHTGEKPYLCNFCSMRFALKGQLNSHIRTHTGEKPYPCDICDARFAHLISLKVHKRTHTGERPYCCDVCNKTFAQRCHFICHQRIHTGEKPYSCEVCGSCFIDRRGLKRHKRTHTDKAVESERTLKNYLNKTNPTNSIWIPENTTNTIPFIKSELVECVFQENVKLEPFELENPDDSDSSPDASKESSIEDKKDTGVKKPTIHKCKDCFKRYRVEDNLKKHICTRGLYQCKECDKSFPFKDRLEIHNRIHTGDKPYVCDVCSKGFISKTRLNLHKKLHNSIKPFVCTLCQKRFHTKPELKSHSRTHSGERPYKCPHCEKRFKFRNNLNLHKVQHTTDIPFKCATCNESFDRLWKLTTHKRMHVGDKFKCEVCSKCFNNKTSLLKHSTIHTGEKPFQCELCSVRFRQKSGLTNHMRVHSGEKPHQCEVCNKSFSQLYSLNEHKRIHTGEKIFQCDLCQARFTHRYSLRIHKLRHAGDKPHKCNVCEKRFYQKGRLVEHHRTHTGEKAFQCDICANRYADKRGLKRHKTQIHP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -