Xxan022477.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:16218642-16221431[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00086 0.018 16.0 1.7 2 23 227 248 226 248 0.98
2 20 0.0069 0.14 13.2 0.5 1 23 254 276 254 276 0.98
3 20 1.2e-07 2.5e-06 28.1 1.5 1 23 282 304 282 304 0.99
4 20 1.3e-05 0.00027 21.7 0.9 1 23 310 332 310 332 0.99
5 20 7e-05 0.0014 19.4 0.1 1 23 338 360 338 360 0.98
6 20 6.4e-06 0.00013 22.7 1.2 1 23 366 388 366 388 0.99
7 20 3.2e-07 6.6e-06 26.8 0.7 1 23 394 416 394 416 0.99
8 20 5.1e-05 0.0011 19.9 0.9 1 23 422 444 422 444 0.99
9 20 3.8e-06 7.8e-05 23.4 0.4 1 23 450 472 450 472 0.99
10 20 6.5e-05 0.0013 19.6 1.4 1 23 478 500 478 500 0.99
11 20 0.00012 0.0024 18.7 2.3 1 23 506 528 506 528 0.98
12 20 4.9e-05 0.001 19.9 0.1 1 23 534 556 534 556 0.98
13 20 7.6e-06 0.00015 22.5 1.4 1 23 562 584 562 584 0.99
14 20 5.1e-05 0.0011 19.9 0.9 1 23 590 612 590 612 0.99
15 20 2.9e-05 0.0006 20.6 0.4 1 23 618 640 618 640 0.99
16 20 1.7e-06 3.5e-05 24.5 0.7 1 23 646 668 646 668 0.98
17 20 2.9e-05 0.0006 20.6 0.4 1 23 674 696 674 696 0.99
18 20 1.7e-06 3.5e-05 24.5 0.7 1 23 702 724 702 724 0.98
19 20 3.5e-05 0.00072 20.4 5.7 1 23 730 752 730 752 0.98
20 20 1.2e-06 2.5e-05 25.0 3.2 1 23 758 780 758 780 0.98

Sequence Information

Coding Sequence
ATGGAAGACCTTTCGATCCATGAAAGAATTATTAGTGGAATGTGCCGTTTGTGTTTAACTAGCGACGATACATTAATTGATATGTTCTCGTTTTCGTCACAGCTGGAAAGTACTATCGTAGATGCTGTCACGAAATGTACTTCCATTCATGTAGAGAAAAATAGTGAATTGCCTAAAACTATATGTGAATCTTGTTATACGCAACTCGTCAAAACGCAGAATTTTCAAAGACAAGCTCTTCAATCTGATCAAACGCTGCAAGTGTATCTGAAACAATTGCAAGATGCCGATAAGCAAAACATACTTGGAAGTTCAGTAGTTGGCGGGAAACATCTTATTGAAACTAACGTTGCTGAACAAGTCAACGAAGATAACAGTGCCAACCGTGAAGAAATAAAGCCTGAAGTTAAATATTTCGAAAGCGGCTGTGAAGAATTTGAAATGGATATTGTTGAACAGAAATTTGTTCCGTTAGAAACTAGGGCACATACGGATTGGGATGTTTATAATTCTGAGAAAGATTCGATTTTTAATCCTAATCTAATAGTAAAGTCCGAACCAATTATAAATGACAGTGAACAGTTAGACATTGATACCGCAGTCTTAAATGATTTCATACCAAATCAGGTGATTATAAAATCAGAGAACGAAGTTTCCAATAAAGTCAGAACGTCAAATCAGTGTGACGTCTGTAAAAATTGTTTCGGCAATTCAGATTTATTGAGAGAACACCAGCGCGTACATGCTGATGAAAAGAGATATCAATGTGCCGTTTGTATTAAGAGTTTCAATAAATCGTTTGCTTTGAGAATGCACGAacgcatacatactggtgagaaaccttatcaatgtgacgtttgcaataagaCTTTTACGAGCTCTGGTAATTTAAAGTTACACCAACGTTCTCATACTGGTGaaaagccatatcagtgtgacgtttgtaaaaaaagtttcagtcaACCAGGTATTTTGACAAGACACCGGCGatcacatactggtgagaagccatatcagtgtgacgtttgtaataaggaTTTCGCGACAAATGGTGCTTTGGGAATACACCAGCGTttacatactggagagaaaccgtatcaatgtggcTTTTGCACTATGAGTTTCAGCGATTCAGGTAATTTGAAATTACACCAGCGTtctcatactggtgagaagccgtatcagtgtgacgtttgtaatatgaGTTTCAGccgctcaggaaatttgaaaTTACACCAGCGTATTCATACCGGCGAGAagccttatcagtgtgacgtttgtaacaagtgtTTTAGTCAGCCAGGTATTTTGGGAAGACATCAGcgtgtacatactggtgagaagccatatcagtgtgatgtttgtaataagagtttcagcgAACCGGCTGTTTTGAAAAGACACCAGCgtttacatactggtgagaaaccatatcagtgtgacgtttgtaacaagtgtTTCAGTCAGCCAGGTATTTTGGGAAGACATCAGCGTtctcatactggtgagaaaccgtataaatgtgacgtttgtaataagagtttcagccAAGCGGTTATTTTGAAAAGACATCATCgtttacatactggtgagaaaccataccagtgtgacgtttgtaataagggTTTCGCGACAAATGGTGCTTTGGGAATACACCAGCgtttacatactggtgagaaaccgtatcaatgtaaCTTCTGCAATATGAGTTTCAGCGGTTCAGGTAATTTGAAATTACACCAGCGTtctcatactggtgagaagccgtatcagtgtgacgtttgtaacaagtgtTTTAGTCAACCGGGTATTTTGGGAAGACATCAGcgtgtacatactggtgagaagccatatcagtgtgatgtttgtaataagagtttcagtGAATCGGTTGTTTTGAAAATACACCAACGcttacatactggtgagaaaccgtatacatgtgacgtttgtaatatgaGTTTCAGCCAAGCGGTTAGTTTGAAAAGACACCAGCgtttacatactggtgagaagccatatcagtgtgatgtttgtaataagagtttcagtGAATCGGTTGTTTTGAAAATACACCAACGcttacatactggtgagaaaccgtatacatgtgacgtttgtaatatgaGTTTCAGCCAAGCGGTTAGTTTGAAAAGACACCAGCgtttacatactggtgagaagccatatcagtgtgacgtttgtagtaaGTGTTTCACGACAAATAGTACTTTGAGAACACACCATCTTGTACATACCggtgaaaaaccatatcagtgtaaTATTTGCAACAAATGTTTCACCCAGTTGGGTAGTTTAAACAAACACATGTCTCTACACACGTCAGATGTTTag
Protein Sequence
MEDLSIHERIISGMCRLCLTSDDTLIDMFSFSSQLESTIVDAVTKCTSIHVEKNSELPKTICESCYTQLVKTQNFQRQALQSDQTLQVYLKQLQDADKQNILGSSVVGGKHLIETNVAEQVNEDNSANREEIKPEVKYFESGCEEFEMDIVEQKFVPLETRAHTDWDVYNSEKDSIFNPNLIVKSEPIINDSEQLDIDTAVLNDFIPNQVIIKSENEVSNKVRTSNQCDVCKNCFGNSDLLREHQRVHADEKRYQCAVCIKSFNKSFALRMHERIHTGEKPYQCDVCNKTFTSSGNLKLHQRSHTGEKPYQCDVCKKSFSQPGILTRHRRSHTGEKPYQCDVCNKDFATNGALGIHQRLHTGEKPYQCGFCTMSFSDSGNLKLHQRSHTGEKPYQCDVCNMSFSRSGNLKLHQRIHTGEKPYQCDVCNKCFSQPGILGRHQRVHTGEKPYQCDVCNKSFSEPAVLKRHQRLHTGEKPYQCDVCNKCFSQPGILGRHQRSHTGEKPYKCDVCNKSFSQAVILKRHHRLHTGEKPYQCDVCNKGFATNGALGIHQRLHTGEKPYQCNFCNMSFSGSGNLKLHQRSHTGEKPYQCDVCNKCFSQPGILGRHQRVHTGEKPYQCDVCNKSFSESVVLKIHQRLHTGEKPYTCDVCNMSFSQAVSLKRHQRLHTGEKPYQCDVCNKSFSESVVLKIHQRLHTGEKPYTCDVCNMSFSQAVSLKRHQRLHTGEKPYQCDVCSKCFTTNSTLRTHHLVHTGEKPYQCNICNKCFTQLGSLNKHMSLHTSDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-