Xxan005280.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754466.1:5419992-5427747[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.0034 0.069 14.2 2.4 1 23 178 200 178 200 0.98
2 31 0.00084 0.017 16.1 3.8 1 23 223 245 223 245 0.98
3 31 4.5e-06 9.2e-05 23.2 1.2 1 23 251 273 251 273 0.98
4 31 0.00098 0.02 15.8 6.9 1 23 279 301 279 301 0.99
5 31 1.7e-06 3.5e-05 24.5 1.7 1 23 307 329 307 329 0.98
6 31 1.2e-05 0.00025 21.8 5.7 1 23 335 357 335 357 0.99
7 31 1.4e-05 0.00029 21.6 4.4 1 23 363 385 363 385 0.99
8 31 1.2e-05 0.00025 21.8 3.8 1 23 391 413 391 413 0.99
9 31 4.5e-05 0.00092 20.0 2.9 1 23 419 441 419 441 0.99
10 31 0.00088 0.018 16.0 1.3 1 23 447 469 447 469 0.97
11 31 0.006 0.12 13.4 0.3 1 23 475 499 475 499 0.92
12 31 2.3e-07 4.6e-06 27.3 2.9 1 23 694 716 694 716 0.99
13 31 6.3e-05 0.0013 19.6 3.8 1 23 722 744 722 744 0.98
14 31 0.00071 0.015 16.3 3.4 1 23 750 772 750 772 0.98
15 31 3e-05 0.00062 20.6 2.5 1 23 778 800 778 800 0.99
16 31 6.6e-07 1.4e-05 25.8 2.0 1 23 806 828 806 828 0.99
17 31 8.2e-05 0.0017 19.2 0.3 3 23 836 856 834 856 0.97
18 31 1.3e-05 0.00026 21.8 5.9 1 23 862 884 862 884 0.98
19 31 3e-05 0.00062 20.6 0.8 1 23 890 912 890 912 0.99
20 31 1.9e-06 4e-05 24.3 2.0 1 23 918 940 918 940 0.98
21 31 0.00046 0.0095 16.9 0.8 1 23 946 968 946 968 0.96
22 31 4.5e-06 9.3e-05 23.2 3.6 1 23 974 996 974 996 0.99
23 31 0.00084 0.017 16.1 8.2 1 23 1002 1024 1002 1024 0.98
24 31 0.031 0.63 11.1 0.7 1 23 1148 1170 1148 1170 0.98
25 31 1.2e-06 2.4e-05 25.0 4.3 1 23 1176 1198 1176 1198 0.99
26 31 0.0001 0.0021 18.9 0.1 1 23 1204 1226 1204 1226 0.99
27 31 1.2e-05 0.00024 21.9 2.2 1 23 1232 1254 1232 1254 0.96
28 31 0.0008 0.016 16.1 1.6 1 23 1260 1282 1260 1282 0.94
29 31 8.2e-05 0.0017 19.2 2.2 1 23 1288 1310 1288 1310 0.96
30 31 0.0023 0.048 14.7 6.5 1 23 1316 1338 1316 1338 0.97
31 31 7.1e-05 0.0015 19.4 2.1 1 23 1344 1366 1344 1366 0.96

Sequence Information

Coding Sequence
atgaatacaaaaataaCACCCGGTGAAGAATTGAATAGCACATGTCGAGTATGTCTGAACGGTGATTCGAATTTAATTGATATATTTACGTTTTCTACTCAATTCGGTTGTCAAATATTCACTGCGATCACAAAATGCGCTCCCGTCCAGATATCTAAAAATGACGGGATGCCTcatttcatttgtaaaatatgttCAAGTAATTTAAAAGTAGCTTACGAATTTCAAGCACAGGCTGTTCGTTCTGAAAGTGCtttacttttatatttaaaaaagcttcacgATACACAAAACGACGTAAAACTTGAGCACTGCAATGAGCAAAGTTTGGATGATTTTTGTTCAGACAACGCCTCCTCCAACGGCGTTATTGAATCTCCGGACGATATTCAGCCTGACATTAAAATAGAAGCAGCagaagacaacacaaaaaacgaCGACAAACAAATAGAGGAACTTAATTATAATTTGGTAAACAACAAAGACGACACGAAACTTACAGACAACGAAAACAATCAGACTGATAAACAGTTCAAGTGCAATAAATGTCCAAGCCAATTCGAGAAAAGTGACCAACTTAAAAGTCATAAATTGACACACAAAAAGTTAAAAGACAGCAAGAAAAGAACAGTAAAAGTGAACAAGAAAAATTCTACTGCACCGCCTTTCGAATGCGAAAATTGCGATAAAAAGTTTACACATCTCGCCGCGTTTAAGTCGCATAAAAAGTCACATTCAAACGATAAATCGTATCGCTGCGATATTTGCGACAAGAGTTTTGCACGATCGAGCAGCTTGAGTTCGCACAAAAAAGAACATACAGGCATAAAACCGTATAAATGCGACATTTGCGATAAACATTTCACTAGAATCCATAAGCTGAAATATCACAAACGAATACATTTCGGCGACAAATTGTTTCAGTGCGATATTTGCAATAAGAGTTTTACATATCAGACGAATTTAATATCGCACAAACGTATACATTCGGGTGAGAAAccttaccagtgtgacgtttgcggcAAATGTTTCACGCAGCTCATTCATTTGAAGTCGCACAGAAAAACGCATTTCGGCGAGAAATCTTACCAGTGCGACGTTTGCGAGAAAAGTTTCATACACGCAAGTCATTTGAAAATTCATAAACGGAAGCATTccggagagaaaccgtatcgaTGTGAAGTTTGCGACAAATGTTTCGCACATCTGAGTAATCTGAACGTTCACAAATTGACGCATTCCAATTggaaaccgtatcagtgcgatgtgtgcgacaAATATTTTAGACAGTTGTGCAACTTGAATGCTCACAAACGAATACATTCGGGAGAGAAACCGTTCGAATGCGATATTTGTGATAAGCGTTTTGCGTATTTCAATAGTTTGAAGttgcataaaattaaacataGCGGCGTTAAAGCGTATCAATGCGATCTTTGCGACAAGAGATTTTCAGTTATGGGACCGTTAGTTCAACATAGACGtATAACAAAACATGACGGAATGCCaaattttatatgcaaattatGTCACAACCAATTGAAAGTAGCTcacgaatttcaaaaaaaagctGTACGTTCAGACAGTACCCTACAtctttatttgagaaaaatacgCGATCCAGACAAGTCGAACGAAATCAGCGATTCTATGAAACCAGAAGACATCGATTCATCTTCAATAACTGATTTGATCAATAAAGATTACGAAAATTCAATGGCTATTAAATGTGAAATTAAAATAGAGGAACCCGACCTCGTTTCAACTAACGATCAAAAAGACATTCATAAAAAATCAGACGACGAAGAAGCCGAAATTGTAAATCTGTATTTAAAGAAATTGCAGAATGCTAACAAAATAGACAGTGATCCACTAGAAAATGAAATTAACGAAAGATCTTCCGTTCAAAACGAAGACAGCAGTGAAGATGATAATATGGATGATACTGATTTGTCGAATAATAAAATCGCAAGTGAAGATAATTCCGAAGAAAAGGAGAAGATTCAAGAATGTCGCAAgacttttgtaaaattaaaaagcatAATGACGCGTCAACGAGTACGTTCGAatggaaaaaattacaaatgtaacatttgtaaaaaatcttttacaacTCTGAGTAATTTAAGATCGCACAGACGTGTCCATTccggtgagaaaccgtttcATTGTGAATTTTGCGATAAGCGTTTTACGCAATTGAGCCAACTCAACgttcacaaacgtatacattcAGGAGATAAACCGTATCGCTGTGACGTTTGCGATACGTGTTTCACGTTTAGTGGTCAGCTAAAATTGCACAAAATAAAACACACCAATGAAAACCCGTTTAAATGTACAGTctgtaacaaatattttacgTCCTTGGGAAATCTAAAAACCCACGAGAAAACACATACGGGTGTTAAACCATACCAGTGCGACGTTTGCGACAAACGATTCACGCAAGCTAGTCATTTGAATGTCCACAAACGTATACACaccggagagaaaccgtacggTTGCAACGTTTGCGATAAATCATTTTCGGTTTTGAGTAAATTAGAAGCGCACAAAAGAATACATTTGGGAGAGCGGCCTTATCAGTGCGACGTATGCGATAAGTGTTTCACGCAACCGACGCATTTGAAAACTCATAAACGTCTTCATTCGggagagaaaccttatcagtgtgaagTTTGCAGCGAAAGTTTCACGCATTCTGTAGGCTTAAAGATACACATGATTAAACATACCGGTGTTAagccttatcagtgtgacatttgcggAAAATGTTTCACACAATTAACTAATTTGAACGCCCACAAAGTTACGCACTCCGGTGGTAAAACTTTTCAGTGCGATGtgtgtgaaaaaattttttcacagtTGAGATATTTAAAGAATCATAAAGTTATACATTCTGCGGCGAAACTATATCAGTGTGATGTATGCGATAAAAGTTTTACGCGCCTACATTCGTTGAACTTACATAAACGAACACATTCTGGGGAGAAACCGTTTGAGTGTGAAGTTTGTAAGAAGTGCTTTACTGATATGTGCAATTTGAAGAAGCATAAACGAAAACATACGGGTGAAAAACCGTATCAATGCGATATATCGAAATACGATGGAAAACCgaatttaatatgcaaattatgTCACAATCAATTAACAATAGCTCACGAATTTCAAAAGAATGCTGTAAGTTCCGACAATACTTTAAAcgtttatttagaaaatttacGTGACCCAAACGGGTCACAAGAACCTGAATGTTCTGATAACATAACTCAAAGTTACaataaagattttgaaaatcccGCACCCATAAAATGCGAAGTTAAAATCGAAGAAACCGATGACATTTTAACAACCGAAGAACATCTGAAAAAGCCGGACATTTCTGAAATTCGTTTAAAGGCAAGTTTTAAACGACTCCATgccggtgagaaaccatacaagtgtgacgtGTGCCGCAAGTCATTTTTAGCCAGTAGCAAGTTAGACGCCCACAAACGTATTCATATAGGTGATAAACCGTACCGGTGCGACATCTGCGACAAATGTTTCACGCAAGCTAGCCACCTAAACGTACATAAACGTAttcataccggtgagaaaccgtaccagtgtgaaaTTTGCAACGAAGGATTCGCGTATTCGGTCGGCTTACGAACACATATGATTAAACATTCCGGCGTTAAAccttaccagtgtgacgtttgcggcAAATGCTTCACTCAATTAACGAATCTAAACACACACAAAGTTATACATGCTGGTGGTAAAAGTTTTCTGTGCAACGTGTGCAATAAAAATTTCTCGCAGTTacggtatttaaaaaatcataaaattgtaCACGCAAACGCgaaattgtttttgtgtgacgTGTGTGATAAAAGTTTCGCGACATTGCATTCATTGAATTTGCACAAACGTACACATTCAGGGGAGAAACCTTATGCGTGTGAAGTGTGCAATAAGTGCTTCAGTGACGTGTGCAATTTCAGGAGACATAAACGACAACATACTggggagaaaccgtatcagtgcgaCGTTTGTGAGAAACGATTCAGTTCGAAACGGagtttaaataaacataaagatttgcATGTTTAA
Protein Sequence
MNTKITPGEELNSTCRVCLNGDSNLIDIFTFSTQFGCQIFTAITKCAPVQISKNDGMPHFICKICSSNLKVAYEFQAQAVRSESALLLYLKKLHDTQNDVKLEHCNEQSLDDFCSDNASSNGVIESPDDIQPDIKIEAAEDNTKNDDKQIEELNYNLVNNKDDTKLTDNENNQTDKQFKCNKCPSQFEKSDQLKSHKLTHKKLKDSKKRTVKVNKKNSTAPPFECENCDKKFTHLAAFKSHKKSHSNDKSYRCDICDKSFARSSSLSSHKKEHTGIKPYKCDICDKHFTRIHKLKYHKRIHFGDKLFQCDICNKSFTYQTNLISHKRIHSGEKPYQCDVCGKCFTQLIHLKSHRKTHFGEKSYQCDVCEKSFIHASHLKIHKRKHSGEKPYRCEVCDKCFAHLSNLNVHKLTHSNWKPYQCDVCDKYFRQLCNLNAHKRIHSGEKPFECDICDKRFAYFNSLKLHKIKHSGVKAYQCDLCDKRFSVMGPLVQHRRITKHDGMPNFICKLCHNQLKVAHEFQKKAVRSDSTLHLYLRKIRDPDKSNEISDSMKPEDIDSSSITDLINKDYENSMAIKCEIKIEEPDLVSTNDQKDIHKKSDDEEAEIVNLYLKKLQNANKIDSDPLENEINERSSVQNEDSSEDDNMDDTDLSNNKIASEDNSEEKEKIQECRKTFVKLKSIMTRQRVRSNGKNYKCNICKKSFTTLSNLRSHRRVHSGEKPFHCEFCDKRFTQLSQLNVHKRIHSGDKPYRCDVCDTCFTFSGQLKLHKIKHTNENPFKCTVCNKYFTSLGNLKTHEKTHTGVKPYQCDVCDKRFTQASHLNVHKRIHTGEKPYGCNVCDKSFSVLSKLEAHKRIHLGERPYQCDVCDKCFTQPTHLKTHKRLHSGEKPYQCEVCSESFTHSVGLKIHMIKHTGVKPYQCDICGKCFTQLTNLNAHKVTHSGGKTFQCDVCEKIFSQLRYLKNHKVIHSAAKLYQCDVCDKSFTRLHSLNLHKRTHSGEKPFECEVCKKCFTDMCNLKKHKRKHTGEKPYQCDISKYDGKPNLICKLCHNQLTIAHEFQKNAVSSDNTLNVYLENLRDPNGSQEPECSDNITQSYNKDFENPAPIKCEVKIEETDDILTTEEHLKKPDISEIRLKASFKRLHAGEKPYKCDVCRKSFLASSKLDAHKRIHIGDKPYRCDICDKCFTQASHLNVHKRIHTGEKPYQCEICNEGFAYSVGLRTHMIKHSGVKPYQCDVCGKCFTQLTNLNTHKVIHAGGKSFLCNVCNKNFSQLRYLKNHKIVHANAKLFLCDVCDKSFATLHSLNLHKRTHSGEKPYACEVCNKCFSDVCNFRRHKRQHTGEKPYQCDVCEKRFSSKRSLNKHKDLHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-