Xxan022677.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:18027695-18036000[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 33 2.5e-06 5.1e-05 24.0 0.9 1 23 175 197 175 197 0.99
2 33 6.4e-05 0.0013 19.6 1.5 1 23 203 225 203 225 0.99
3 33 7.2e-06 0.00015 22.6 1.0 1 23 231 253 231 253 0.99
4 33 8.2e-05 0.0017 19.2 3.6 1 23 259 281 259 281 0.98
5 33 1.5e-05 0.00031 21.5 0.7 1 23 287 309 287 309 0.99
6 33 9.1e-05 0.0019 19.1 0.8 1 23 315 337 315 337 0.99
7 33 3.7e-05 0.00075 20.3 2.3 1 23 343 365 343 365 0.99
8 33 7.6e-06 0.00016 22.5 1.7 1 23 371 393 371 393 0.99
9 33 2.4e-06 4.9e-05 24.1 2.2 1 23 399 421 399 421 0.99
10 33 0.057 1.2 10.3 1.4 1 23 427 449 427 449 0.96
11 33 8.4e-06 0.00017 22.3 1.3 1 23 455 477 455 477 0.99
12 33 4.2e-05 0.00086 20.1 4.5 1 23 483 505 483 505 0.99
13 33 6.8e-05 0.0014 19.5 0.9 1 23 511 533 511 533 0.98
14 33 0.0005 0.01 16.8 5.8 1 23 539 561 539 561 0.98
15 33 0.00012 0.0025 18.7 0.5 1 23 567 589 567 589 0.98
16 33 9.2e-06 0.00019 22.2 2.0 1 23 595 617 595 617 0.99
17 33 8.8e-06 0.00018 22.3 1.7 1 23 623 645 623 645 0.98
18 33 0.00021 0.0043 17.9 6.9 1 23 651 673 651 673 0.99
19 33 0.0002 0.0042 18.0 6.8 1 23 679 701 679 701 0.98
20 33 0.031 0.64 11.1 7.3 1 23 707 729 707 729 0.99
21 33 3.9e-06 8e-05 23.4 0.6 1 23 884 906 884 906 0.98
22 33 4e-06 8.3e-05 23.3 0.7 1 23 912 934 912 934 0.99
23 33 0.00013 0.0026 18.6 3.9 1 23 940 962 940 962 0.98
24 33 1.9e-06 3.8e-05 24.4 0.5 1 23 968 990 968 990 0.99
25 33 5.1e-05 0.001 19.9 0.4 1 23 996 1018 996 1018 0.99
26 33 7e-05 0.0014 19.4 0.6 1 23 1024 1046 1024 1046 0.96
27 33 0.00025 0.0052 17.7 4.1 1 23 1052 1074 1052 1074 0.98
28 33 0.00087 0.018 16.0 6.1 1 23 1080 1102 1080 1102 0.99
29 33 0.00025 0.0051 17.7 4.1 1 23 1108 1130 1108 1130 0.98
30 33 3e-05 0.00062 20.6 6.1 1 23 1136 1158 1136 1158 0.98
31 33 5.1e-06 0.00011 23.0 0.7 1 23 1164 1186 1164 1186 0.99
32 33 0.00026 0.0052 17.7 5.6 1 23 1192 1214 1192 1214 0.98
33 33 5.2e-05 0.0011 19.9 0.7 1 23 1220 1242 1220 1242 0.98

Sequence Information

Coding Sequence
ATGGACCTCAACGAGGAAGAAAAATTTTCTGTGGATTTTAATGCTGAAAACAAAATGAACGACGAAATActtttaaaatccgaaatcaaagacgaaccgaTCGATGCATTGTTTTCATCTGACTGTACTGATTATACCAGCTGTGAAGACTCAAAATTCGTTGTAGGCGACTCAAAATTAAGTTTAGACATGCATTTCAACTTGAAAAACACAGAATCGACCACTTTGAATTCAACAAACGAAAATAACGAAGGAATGCCTTTAAAAACCGAAATAAAAAGTGAACCGATCGATGATAATTCAGTATTTTTAACAGAATATAATGATAAAGCGTTTTCATCTAACGACGAAGTCAGTAAAATCAGTTGTGAAGACTCAAAAGCAGATTTTGGTCACACATCGAAGGACTTCTCGAATTTTCATTCTGCTGATGTAAcagaatattttgataaatgtaACGAAGAAAATAAAGCTAGAATCTcagcaaataatgaaaaacatgaaaagccaactgaaaaaaaatatcagtgcGACGTTTGTGAAAAGACTTTTTCAAATTCAGGCAACTTTAATGTTCATAAACGtgtacatactggagagaagcCGTATAAATGCGACGTGTGTGAAAAGTTTTATACTGACTCTGGCAGTTTATCTAGTCACAAGCGTacacatactggagagaaaccgtatcaatgcgaTATGTGTGAAAAGTCATTTTCGATTTCCGGCAACTTGAAAATTCATAAACGCACGCATACCGGAGAAAAACCGCATCGATGTGACGTTTGTGGAGTGAGTTTTTGTCGCCGGGCTGGCCTCAAGagacacaagcgtatacatactggagagaaaccgtatcaatgtgaagTTTGCGAAAAGTTTTATGCCGACTCTAGCAgtttaaatattcacaaacgtacgcatactggtgagaaaccgtatgaatgtgacatttgtaaaaggAGTTTCGGTCGCCTAAGAAGTTTAGTGATacacaaacgtacacatactggtgaaaaaccgtatcaatgtgatgTTTGTGAAAAGTTTTATGCGGACTCTGGCCATTTAAGACagcacaaacgcacacatactggtgagaaaccgtatcaatgcgaTGTTTGTGAAAAGTTTTTCTCTTCTTCTAACAacttaaatactcacaaacgtatacatacggGTGAAAatccataccagtgtgacatttgtaatatgCGTTTCAGCCAATCGAGCAGCTTAAAAAGACACAAACTTACGCATTCcggcgagaaaccgtatcatTGTGACATTTGTGACAAACGTTTTGGTCGCTTAAACATTTTCATTGTACACAAACGCATACATACCGGAGATACGCCATATCAGTGCGATTTATGTGAGAAGTCATTCTTCGATCGtggaaatttaaatattcacaaacgtacgcataccggagagaaaccgtacaaatgtgacgtttgtaatatgtGTTTCAACCGATCAAACAGTTTAACAAGACACAAACGCAttcataccggtgagaaactctatgagtgtgacgtttgtaatcaGTGTTTTGCTCAGTCAGGTGCGCTTACACGACACAATAAagtgcatactgGCGAGAAACCGCATCAATGCGACGTTTGTGATGTGCGTTTTTGTCACCTGGGCAATCTCATAAGacacaaacgtacacatactggtgagaaaccgtatcaatgcgaTGTTTGTGAAAAGTTTTACGCCGACtctggcaatttaaaaattcataaacttAAACATGCGGGCGTAAAACCAtttcaatgtgacatttgtgaaaaaagtttcagtcgCCCAAACACTTTTAATTTGCACAAACGTACGCATACTGGTGATAAGCCGCATCGCTGTGACGTTTGCGACAAGTCTTTCTCAGATCCTACCAGTTTAAACGgtcacaaacgtacacatactggtgagaaaccgtataagtgtgacgtttgtaaaaagtgttttacaAAATTGCACAGTTTAAAAGTTCATGAACGTACGCATACTGGGGAGAAACCGcatcaatgtgacgtttgtaatatgtGTTTCAATCAACGAAGCAGTTTGTCAAGACACAAACGTACGCATACCGAGGATacgccgtatcagtgtgacgtatgTGAAATGTGTTTCTGCAAGCTGTGCGATTTGAGTGCTCATAAACGtacgcatactgAGTTGGAAGTCAAACACGAATCAATGGATGATAAATCATTGTGTCCAGCTGGAAATGCTGGTGATACAGGAGTTGATGGGAGTGAAATAAGTTGTGAAGACACAAAATTCGATGTGAGAGATAGTAAATTAGATGTAAACTGGAAAGGGACAGGAACCGCCACTTTTCATTCAACAAATGAAATTAATGAAGCAATGCctttaaaatctgaaataaaaaatgaacctATGGATGATAATTCATCCATATTTTTACCAGAATACATCGATGACTCTATAAACTTTTCGACTAATGGCGACTGCAGTGaaataaattgtgaaaaaacAATTGGTCCCAAATCGGAAAGCGTCTCGAATTTTTGTTCTGCTGAGCTAacagaatattttaataaatgtgaaGAGAAAAACAAAAGTGTCTGGTCACAATATCAGAATAATGAAGACCCAactgaaaaaaagtataattgtGAAGTTTGTAACAAGTCTTTCATAAACTTAGCCAATTTAAATGTTCACAAACGTACACATTCTGGCGATAAACCGTATCAATGCGACGTTTGTGAAAAGAGATTCAGTCAGGCAAGCACCTTAATAACACACAAACGCatccatactggtgagaagccgtatgagtgtgacgtttgtaagaaGTGCTTTTCTACACCCGGATGTTTAAAGGATCACAGTCGTGtacatacaggtgagaaaccgtataggTGCGACGTTTGTCAAAAGTCCTTCTCCACTTCAGGTAGTTTAATTgctcacaaacgtatacatactggagaAAAGCCGTATCAATGCGACGTTTGTGAAAAGCGATTCAGGCAGGCAAGCTCTGTAATAATACACAAACGtattcatactggtgagaaaccgtacgagtgtgacgtttgtaaaaagcgTTTTTCTCAATCATCTGAGTTGAAGGGACATAATCTCGTACATACCGGTctgaaaccgtatcagtgtgacgtttgtgacAAGTGTTTTTTTACATCTACAAAACTAAAGGAACACAATCGcgtacataccggtgagaaaccgtacaagtgtgacatttgtaacaaGTGTTTTTTTACATCAGGATGCTTAAAGGAGCACAGTCGTGTTCATACCCGTAAAAAACcgcatcagtgtgacgtttgtaaaaagtttttcttCACGTCGGGAAATCtaaatactcacaaacgtatacataccggTGAAAAACcgcatcagtgtgacgtttgcaaaaaGAGTTTCAACGAGGCAAGTCATTTAAAGAGACACAAACGTACTCATACTGGTGATacgccgtatcagtgtgacgtttgcgaaCGGTCTTTCTCTATGTCGGGAaatttaaatgtccataaacgTACACATACAGGTGAAAAACcgcatcagtgtgacgtttgtaaaaagttgTTCTCGCACTCTAGCAGTTTAAATGTTCACAAACgtacacacactggtgagaaactgcatcaatgtgacgtttgcgAAAAAAGTTTCGGTCAAGCAGGCAATTTAGTGAAACACAAACTTACTCATACTAAGGAGAAACCATAA
Protein Sequence
MDLNEEEKFSVDFNAENKMNDEILLKSEIKDEPIDALFSSDCTDYTSCEDSKFVVGDSKLSLDMHFNLKNTESTTLNSTNENNEGMPLKTEIKSEPIDDNSVFLTEYNDKAFSSNDEVSKISCEDSKADFGHTSKDFSNFHSADVTEYFDKCNEENKARISANNEKHEKPTEKKYQCDVCEKTFSNSGNFNVHKRVHTGEKPYKCDVCEKFYTDSGSLSSHKRTHTGEKPYQCDMCEKSFSISGNLKIHKRTHTGEKPHRCDVCGVSFCRRAGLKRHKRIHTGEKPYQCEVCEKFYADSSSLNIHKRTHTGEKPYECDICKRSFGRLRSLVIHKRTHTGEKPYQCDVCEKFYADSGHLRQHKRTHTGEKPYQCDVCEKFFSSSNNLNTHKRIHTGENPYQCDICNMRFSQSSSLKRHKLTHSGEKPYHCDICDKRFGRLNIFIVHKRIHTGDTPYQCDLCEKSFFDRGNLNIHKRTHTGEKPYKCDVCNMCFNRSNSLTRHKRIHTGEKLYECDVCNQCFAQSGALTRHNKVHTGEKPHQCDVCDVRFCHLGNLIRHKRTHTGEKPYQCDVCEKFYADSGNLKIHKLKHAGVKPFQCDICEKSFSRPNTFNLHKRTHTGDKPHRCDVCDKSFSDPTSLNGHKRTHTGEKPYKCDVCKKCFTKLHSLKVHERTHTGEKPHQCDVCNMCFNQRSSLSRHKRTHTEDTPYQCDVCEMCFCKLCDLSAHKRTHTELEVKHESMDDKSLCPAGNAGDTGVDGSEISCEDTKFDVRDSKLDVNWKGTGTATFHSTNEINEAMPLKSEIKNEPMDDNSSIFLPEYIDDSINFSTNGDCSEINCEKTIGPKSESVSNFCSAELTEYFNKCEEKNKSVWSQYQNNEDPTEKKYNCEVCNKSFINLANLNVHKRTHSGDKPYQCDVCEKRFSQASTLITHKRIHTGEKPYECDVCKKCFSTPGCLKDHSRVHTGEKPYRCDVCQKSFSTSGSLIAHKRIHTGEKPYQCDVCEKRFRQASSVIIHKRIHTGEKPYECDVCKKRFSQSSELKGHNLVHTGLKPYQCDVCDKCFFTSTKLKEHNRVHTGEKPYKCDICNKCFFTSGCLKEHSRVHTRKKPHQCDVCKKFFFTSGNLNTHKRIHTGEKPHQCDVCKKSFNEASHLKRHKRTHTGDTPYQCDVCERSFSMSGNLNVHKRTHTGEKPHQCDVCKKLFSHSSSLNVHKRTHTGEKLHQCDVCEKSFGQAGNLVKHKLTHTKEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-