Xxan017583.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
pol
Assembly
GCA_963575645.1
Location
OY754473.1:9673832-9676779[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-08 2.2e-06 27.8 0.0 5 39 1 36 1 41 0.87

Sequence Information

Coding Sequence
ATGGTGTTGGCAATTAAAGCAGTTAGGCAACATGACATGGGGTATAAAACAGCGGCAAAGCAATTTGGAGTACCAAAAGGCACCCTCGAACGGTAtgtgaaacaaacaaacatttctCCAGAGCAGGTTGTGTGTGGAACTTCTGGTAGAAAACCTGCTTTAAGTAAAGAAATAGAGACTGAATTAGTTCAGTATTGTCTCAATATGGATAATAGATTTTTTGGTTTGCGAAGGTCAGATGTAAAACGTATGGCTTTTGAATTAGCTATAGCTAATAATATTCAACATCCATTTTCGAACACAAAAGGGACTGCAGGGAAAAAATGGCTCAGGAGCTTTCTAAAACGTCACCCCGAGTTGTCAGTTAGGTCACCTCAAGGTATGTCCAATGCCAGAATACGAGGTTTTAACAAAGAGAACGTTGCTACGTTTTTTGAACTGTATGAAAAAGagttagaaaaaattaattttgaaccaCACTTGCTGTACAACGTTGATGAGACGGGAATTAGTGTGGTGCAGCATAAAAGAAGTAAAGTTATTTCTGCTAGAGGAAAGAAACAAGTAGCAACACTGACCTCAGCAGAAAGGGGTGGTTTAATTACAGTGGTTACATGTATGAATGCTGTAGGTACTTACGTACCCCCCTTAATTGTCTGGCCcagaaaaaatatgaaacttgAATTGATGGATGGTGCACCAGCCGGTTCCATATACGCTTGTCATCCATCAGGCTGGATACAGACAGATATCTTTACACAGTGGTTTGaccattttgtaaaatttgctAAGCCGACAGCGTCTCAGCCTGTGCTATTAGTGCTCGATGGGCACTATTCTCAAACTCGTAACATAGAAGTAATAAATAAAGCAAGAGACAACCATATTTCGATTGTTTGTCTACCCCCCCATAGCACCCATCGCATGCAGCCGTTGGATGTGGGCTTTATGAATCCGCTAAAAACCTACTATGCTCAGGAAATTGAAACTTGGTTGCGAAACCATCCTGATAGAGTTGTAACACCATTCATCATTGCCAGATTATTTGCTACTGCTTATAACCGAGCAGCTACTATGGAGGTCTCGGTTAACGCTTTTAGAACAACTGGTCTATTTCccctgaataaaaatattttccggGAACATGACTTTACCATCTTTGAAGGTGACGAGGAATCTGCAATTAATACGGAAAACAACTCAACGCAAATTCGAACGGGAGCTTTGGATAATTCAGACGAAGATTCTCCTAAATCTCGTGCAGGACCTTCTAAAGATTTTCTTGAAGTTGAACAATCTCGTCCAGGAACTTCAAAGGATTTTTCTGAAGTTGAACAGGCTCTTCCAGGTTTCTCAAAGGATTCTTCTCAAGCTAAACAATCTCGTCCAGGGACTGCTACTAAAATCGTAAGTCCAGTGCAAATAAGATCTCTTCCAAAAATTTCGGCAAAGAAACCCAGTGCACGTTCCGGAAGTGCAGCTTTAATTACCTCATCTCCATATAAAAAAGACCTATTAGCGAGTTTGGATAAAAAGGAAAAAGGTAAATCAATTAATAGTAACGTCATCAGAAAAGTCACGAAGAAAGTAAAATTTGATAATGCTGAGACCAAAAGCCTTTTGAACAGTggcaagaaaacaaaaaaaaagaagcaaGTAGTAAACGACTTTTCAAGTGATGAAAGCGACACTGAAGTTTCTTTCAACGACGAGAGTGATGACGAAGAAAACAACGATGCACAGTGTGTATTTTGCACAAACCTGTATTCTGAAGATAAACATGGCGAACAGTGGGCTACTTTACATACTCCACTCACATTCACAAATAATGTTAAACATCAAATTAAAACTAGCGATGAAGCCccagtttatcaaaaatgttatcGCATTCCACACGCAAATAAAAAAGATGTTCAAAAAGAAATATCAAAACTCCTGAATCAAAATATTATTCGACCAAGCCACTCACCATGGTCAAGTCCTGTCCTTCTAGTTCCAAAAAAACAAGACGCTTCTGGTTTAACAAAAATGAGGCTTGTAATTGACTACCGTAAACTCAATGACAAAACAATACCAGACAAATACCCACTTCCCAACATCGAAGACATTCTTGACAAACTAGGACGTGCACAATACTTTACAACAATAGATCTTGCATCAGGGTTCCACCAAATTGAAATGGACCCTAATGACATACAAAAAACGGCATTTGTGTCAGACAATGGCCATTACGAGTTTTTAAGAATGCCATTTGGACTTAAGAATGCTCCCTTAACTTTTCAAAGAGTTATGGACAACATATTAAGAGGCATCCAAAACCACTTTTGTCTTGTTTACATGGATGATATTATTGTGTTTTCGGCAAGTCTAGAAGAACATATCGTACATCTTAGTAAATTATTCACAAGATTAAGAcaagcaaatttaaaaattcaattagacaaaactgaatttttaagaaaaacagtAAACTTCCTTGGACATGTTATCACTCCCGAAGGTATTAAGCCCAATCCTGAAAAAATTTCCGCAATTTTAAATTATCCCATCCGCAAAAGgaaataa
Protein Sequence
MVLAIKAVRQHDMGYKTAAKQFGVPKGTLERYVKQTNISPEQVVCGTSGRKPALSKEIETELVQYCLNMDNRFFGLRRSDVKRMAFELAIANNIQHPFSNTKGTAGKKWLRSFLKRHPELSVRSPQGMSNARIRGFNKENVATFFELYEKELEKINFEPHLLYNVDETGISVVQHKRSKVISARGKKQVATLTSAERGGLITVVTCMNAVGTYVPPLIVWPRKNMKLELMDGAPAGSIYACHPSGWIQTDIFTQWFDHFVKFAKPTASQPVLLVLDGHYSQTRNIEVINKARDNHISIVCLPPHSTHRMQPLDVGFMNPLKTYYAQEIETWLRNHPDRVVTPFIIARLFATAYNRAATMEVSVNAFRTTGLFPLNKNIFREHDFTIFEGDEESAINTENNSTQIRTGALDNSDEDSPKSRAGPSKDFLEVEQSRPGTSKDFSEVEQALPGFSKDSSQAKQSRPGTATKIVSPVQIRSLPKISAKKPSARSGSAALITSSPYKKDLLASLDKKEKGKSINSNVIRKVTKKVKFDNAETKSLLNSGKKTKKKKQVVNDFSSDESDTEVSFNDESDDEENNDAQCVFCTNLYSEDKHGEQWATLHTPLTFTNNVKHQIKTSDEAPVYQKCYRIPHANKKDVQKEISKLLNQNIIRPSHSPWSSPVLLVPKKQDASGLTKMRLVIDYRKLNDKTIPDKYPLPNIEDILDKLGRAQYFTTIDLASGFHQIEMDPNDIQKTAFVSDNGHYEFLRMPFGLKNAPLTFQRVMDNILRGIQNHFCLVYMDDIIVFSASLEEHIVHLSKLFTRLRQANLKIQLDKTEFLRKTVNFLGHVITPEGIKPNPEKISAILNYPIRKRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01510479;
90% Identity
-
80% Identity
-