Xxan018008.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754473.1:11529868-11530497[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-07 4.4e-05 23.6 0.0 1 33 18 50 18 59 0.91 2 2 0.71 1.3e+02 2.9 0.0 17 28 142 153 136 154 0.86
Sequence Information
- Coding Sequence
- ATGCCCCGAAAATACCAGAGAAAACCTGGATCTCGCCAATATAGAAATTATACTGAAAAGACGTTACAAAAAGCCCTTCGCAGTAtaaaagacaaaaaattaaGCACACGAGATGCTGCGGAAAGatatggaATTCACCGCAATACTTTGTTTTTGAAACTTCATAACAAACATAGTCTTTCCGCTGGTGGTCAAACCGCATTGAGCAAAGAAAAAGAAGGGTCTATCATTGCTGACATAATCGCTGTATCGACATATGGTTTCCCCGTGACGGCTCATGAACTACGATTCATAGTAAAGGCATACGTGGATAAGAAAGGGAAAAAGGTGaggtgtttcaaaaataatttcccGGGAAAAGAATGGGTGACCTCATTTCTTGATAGACACAAGAATATGTTGGCTAATCGAGTTGCTCGAAACATAAGCATTTCGAGAGCTGCAATTAATCATGAAATTATAAATGCCTTTTTCGACAATCTGGAAATAGAGAGAATGTTGAACCATCGAATGTTTGGAATTATGACGAAACTAATCTTGAGGATGATCCTGGTTCAACAAAAGTAA
- Protein Sequence
- MPRKYQRKPGSRQYRNYTEKTLQKALRSIKDKKLSTRDAAERYGIHRNTLFLKLHNKHSLSAGGQTALSKEKEGSIIADIIAVSTYGFPVTAHELRFIVKAYVDKKGKKVRCFKNNFPGKEWVTSFLDRHKNMLANRVARNISISRAAINHEIINAFFDNLEIERMLNHRMFGIMTKLILRMILVQQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -