Xspa003374.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352222.1:3346810-3354483[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.01 0.58 10.9 1.3 1 23 458 480 458 480 0.97 2 11 0.26 15 6.5 1.4 2 23 488 510 487 510 0.94 3 11 1.4 82 4.2 3.5 1 23 514 536 514 536 0.97 4 11 0.065 3.7 8.4 3.3 1 23 541 564 541 564 0.96 5 11 8.4 4.8e+02 1.8 3.3 1 23 567 590 567 595 0.89 6 11 0.055 3.1 8.6 1.0 3 23 662 683 661 683 0.98 7 11 0.25 15 6.5 1.1 1 21 691 711 691 715 0.92 8 11 0.079 4.5 8.1 7.7 1 23 791 813 791 813 0.95 9 11 0.013 0.75 10.6 1.1 1 23 819 841 819 841 0.94 10 11 1.4e-06 7.8e-05 23.1 3.3 1 23 846 868 846 868 0.97 11 11 0.001 0.057 14.1 0.1 1 23 874 897 874 897 0.94
Sequence Information
- Coding Sequence
- atgtcagAGAAACCATCAGTGAAGATGTGTAGAGTGTGTCTATCGGATAATGTCATCGCAGAAGCTATTGACACAAGACTTTTGGATTTCTACAACGAAACAACTGCTGTGAATGTGTTTCCACACCCCATGCTCTCGTTCTGTCCTCTCTGTGAGTACAAGTTGAGGAAGTTCTACAACTTCAAACAGAGATGTCTCAGATCCAACTTTGTACTTAAGAAGGAGATAACTAATGCCGGACCTATAAATTTAAAATCATTGCAACGTTTGATTCCTCATGATTTGGGAATATCAGTGCCGGGCGATAGACGAGGATTTTATGAATTTAAGTGCAATAGTTTTATCGCTGAACAAAACTCAGCGAATAAAACTATACCTCAAACACATACAAACAACTTAAATGACGTAAAAACTGAAGAAATGATTATTAATCCTGATAAAATTAAAATAGAAATATTCGAAGATCCTTTATCAGTGGATCAGAATGATTCTACTTTTAAGCTTATGGAGGTAGATAAGTTTGAAGATACAGAAAATGATCCAATTGAAAATACAATAGAAACAGATGCAAATGATAGAGCAATAAAAAATGATGCAAGAAATGGTGATGCAGTAGATAATGATAGAATTGAAAACAAGGCAATATATGAAGATGGTATTCATGCAATTAAAGTAAAAGAAAAAGATACAATTAATGATAGACCAATAAAAAAATATAGAAAGTTATTAAATGATAAAAAAATTAAAAGTGATGCAGTAGAAAATGATACAATTGAAGATGAATCAATTGAAAGTGACTCACAAGACAGTGACGATGAAACGCTAACTAAAAAGAGAAACAAAACAACAAAAGTATCAAATAAAACAAATACAATTCACAAAACCACAACTGAAAAACAGGGAAAATCTCAATATTCAGAAACAGACAGATTCACACCGGAACAATTAGATGCATTAAGTAAAGAAACAATGACTATGAATGATTTTGATTTAACTCAGCTTAAGATAATAAAAAAATGTCTGTCTAAGGAACAGAAGAAGCAGTTAAACTTTCAATTAGATGTTGAGAAACTGAAGGAATACTGTCTCGAACTTTTGGATGAAGAGAAAGTGGATTTGGGTGAAGTGAAGATGAACAAAGAATTGTTTTTAGATATGTTTGGGAAGTGTGATATTAGTAACATAAAAACACTTGGAGTTGTTAACCAAATGGATAATTTATCAAAAATTAAGAAATTTCTTCTGTATCTTCACAAAAAATACAACCCAGAGTATGAGACTATTTTCGAAATAGATTATCTCTGTACTAAAGAAAAGAAAATCCAAGAGTTTAACTCGAGGAAGAACAACAAACAGTATATTGAAGCTGCTTACAAGTGCGAAGAATGCTATCTGCCTTTTACTTATCTACAAAAATTGGAATATCACAAGAAAGGACATGTTGTAACACCAAATGATATAGTTTGCGTCATATGTCCCCTGCGTTTTGCTAGTAAAACGAGATACTATTCGCATCGTAAGGAGTGTCACACAGCTGTGTACAGATGTAAACTATGTCCCGTAGTGACGTACCATCATTCCGTGATGTTGAATCATTACAATCAACATAAAGGCGTTGAGCACCATTGTCCAATATGCTTGAGTGTCTACAACAACAAGACGACATTCGAGAGCCACTACCGCTCAGCGCATGCCACTCACGTCTGCAACTTTTGCTTGCGCAGATTCGTATCAGAGAATGGACTCGAATGCCACAAGAAATTAAAGCATAAGGTATCTTATATGAGGTCACTGGTACTCTCACGAGGTCACTGGTACTCTCACGAGGTCACTGGTACTCTCACAAGTTCGATGGTACTCTCACGAGGTCACTGGTACTCTCACGAGGTCGCTGGTACTCTCACGAGGTCACTGGTACTCTCACGAGGTCAATGGTACTCTCACGAGGACGAGGTTGCGGCGAACCCCGCAGAAGCGACCTTATGTACAGAATGTAACGTCACATTCGACTCGCACGCGGTTTACTTACGACATTCTAGAACTGCGCACGCGCGCCGAACGGAGACTGTATACAAATGCTACTTCTGTAAGGACAGCTTCGACAGCATCGAAGCGCTTCGGAAGCACAAGTTGGAGCTAAACCACCAGAGGGCGCCGAAAAAGGTTACAAAGGTACCGCGGACATCTAGCTCTAAGCCGAATACTGCAGAAGGAAAGCGCAGGCGGGTCATTGACCCCGACGAGCCGTACAGGAAGTGCCCAGTATGCCAAGTGGAAGTGCCTAATACATTCCGTACAAGTCTCTACAAGCACTATAAGAAAGCTCACCCGGATGTACCGTACAAATCACTGTTCACTGACTCCAAGAATTATCTGTGCGAGCATTGCGGCAAGACCTTCCGGGTGTACTGCCACTACCTAGATCACAAGAACCAGCACACCGGCCTGAAGCCGTACTTGTGTAAGGAATGTCCCGCTCAGTTCGCTACCAGAACTCATCTGGTCTATCACTCGGAGAGGCATCGTCCTCGTCGCCATAAATGTAAAGATTGCGGGAAGATGTTCCGTACAGCTTCTAATTTGTATACACATAGCAAGATTCACATCGGCGATCGGCGTTATAAATGCAATATTTGCTTCAAAGGATTCCTGCGTCCGGCCGCGCTTAAGAATCACATAGCGGGTGTTCACAACCATATAAGAAGGAAGCGGAAGCTGCCATCGAAAGATAAAAAGGAGCTTTAA
- Protein Sequence
- MSEKPSVKMCRVCLSDNVIAEAIDTRLLDFYNETTAVNVFPHPMLSFCPLCEYKLRKFYNFKQRCLRSNFVLKKEITNAGPINLKSLQRLIPHDLGISVPGDRRGFYEFKCNSFIAEQNSANKTIPQTHTNNLNDVKTEEMIINPDKIKIEIFEDPLSVDQNDSTFKLMEVDKFEDTENDPIENTIETDANDRAIKNDARNGDAVDNDRIENKAIYEDGIHAIKVKEKDTINDRPIKKYRKLLNDKKIKSDAVENDTIEDESIESDSQDSDDETLTKKRNKTTKVSNKTNTIHKTTTEKQGKSQYSETDRFTPEQLDALSKETMTMNDFDLTQLKIIKKCLSKEQKKQLNFQLDVEKLKEYCLELLDEEKVDLGEVKMNKELFLDMFGKCDISNIKTLGVVNQMDNLSKIKKFLLYLHKKYNPEYETIFEIDYLCTKEKKIQEFNSRKNNKQYIEAAYKCEECYLPFTYLQKLEYHKKGHVVTPNDIVCVICPLRFASKTRYYSHRKECHTAVYRCKLCPVVTYHHSVMLNHYNQHKGVEHHCPICLSVYNNKTTFESHYRSAHATHVCNFCLRRFVSENGLECHKKLKHKVSYMRSLVLSRGHWYSHEVTGTLTSSMVLSRGHWYSHEVAGTLTRSLVLSRGQWYSHEDEVAANPAEATLCTECNVTFDSHAVYLRHSRTAHARRTETVYKCYFCKDSFDSIEALRKHKLELNHQRAPKKVTKVPRTSSSKPNTAEGKRRRVIDPDEPYRKCPVCQVEVPNTFRTSLYKHYKKAHPDVPYKSLFTDSKNYLCEHCGKTFRVYCHYLDHKNQHTGLKPYLCKECPAQFATRTHLVYHSERHRPRRHKCKDCGKMFRTASNLYTHSKIHIGDRRYKCNICFKGFLRPAALKNHIAGVHNHIRRKRKLPSKDKKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -