Xspa008369.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthorhoe spadicearia
Gene Symbol
lolal
Assembly
GCA_947086425.1
Location
OX352209.1:1732562-1757552[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.3e-05 0.0013 19.2 4.3 1 23 379 401 379 401 0.97
2 2 9.4e-06 0.00054 20.5 0.1 1 21 407 427 407 428 0.95

Sequence Information

Coding Sequence
ATGCAGGGGCTGGCGAGCGACAAGACGTTCCACTTGAAGTGGAACAACCACCTGCAGAACCTCAGCCAGCTGTTCACGACGATCTACTCGTCGTCAGCGCTGGCGGACGTGACGCTCTCCTGCCGCGACGGGACCCTCAAGGCGCACAAACTGGTGCTCTCGGCCTGCAGCCCCTACTTCGAGCAGATATTCAAGGAAAATCCATGTCAGCACCCCATAGTGATCCTGAAGGGGATTCCCTTCTCGGAGATAAACCTCCTTGTGGAGTTTATGTACAAGGGTTCAGTAGACGTCCAAGAATTGGATTTGCAGTCCCTGATGCATACAGCTTCCGAGCTGGAGATTCGAGGCTTGGCATACGAAGCTCGGGACAATGCGGCTCAGCTTCTCAATGTCAACTTGGAGTATCCATCATATCCACAGACGTCAACGTCTACTCAAGCCCAGGCCTTCCCACAGGCACGGACTGATGTTGAGCGCCTCAAACAGATCCACATGTACCAGCAATCCATGATGAGGGCTGAAGAGATCCGCCGACGGCGTCGCGAGGACCCTCCCAACACCAACACCGCTGTTAACAACATCTTAGCAGCAGCTGCAAGGGAAATGGAGGAGGCTCGACATGCTGCCAGGGCCGAGCGAGCTGTCAGCATCCAAACTGAACAGGACCAAGCAGCTGCGAGGGAAATGGAGGAGGCTCGACATGCTGCCAGGGCCGAGCGAGCTGTCAGCATCCAAACTGAACAGGACCAAGTTGTCCACCCGGCGTCATCTACAACCAACACAATGGAAGCTAAGCGCGACGTTGAGGATGATCGTCCCAAGAAGCGCGTCTCTATCCTATCTCCGGAAGACGACAAACTGAAGGTCAAGAAGAAACCGATGACGGTCAGATTTCAAGAGGACGTGAAGGGGGAAGAACGAAGCAAGCTTACATCACCCGGCGCCCCAATCGAGAAGAACGAGAGCCACCCCAGCGGCATCAAGGTGGTGCAGCTAGCTGTCCTGCAGAAGCAGAGCAACGAGAATGATGATTCTGATGAGAAGAAACTGGTGATGGATGAAGATGAGGAGACAGACTCCAGCGGTTCCATATCCGACTCAGCAACCAACGACCAGCAGGAGGGGCGGCCTCACGTCTGCGAGGTCTGCGATCTCAGATTCCAGCGCTCATCTCACCTGAACCGGCATCGTCTGACCCACACCGGCGAGCGACCCTTCACTTGCGGCGGGTGTGGACGATCCTTCGCGAGATCAGACAAGCTGCGCGTGCACACCAAGATCTGTGAACGAGAGGACCCAACAGTGGACATGGCCAACGATACATCGTTCAAGCGCGAGAACAACAGCAACGCTGAAGTAATGTCCGGCATGGTGCGCACTACGCACAGGGAGTCCGGACATCTTGTGTTCACTCCGAGCGGTGACGTAATGCTGCCTCCCCGTACCGCCCCTCTCGTACTAAATGCGAGCCTGGAACCGGTCCGCAACGAGCTAACAGCAGACAACATACTAGAGCCGCCGCGTCGAGGCCGCGGGCGGCCGCGCAAGACGCCGCTGCCCATGACGCCCAAGATCAAGAAGCGTAGAGGACGCCCGCCTAAGACTTCCCTAGACATGGAAGGTTGCGTGTTGACGGGCGGCACAGTGCTTGGTCCGAGCGCAGCCGCGGTCGCCAACCTGTCTCCCGCCGGGCAACAGTTGCTACTCAAGAGGAAGCGGGGACGCCCGCCGAAGAACTACTTCATGCCCTCTAGACCAGGTATGGATTTCGATTTACCGCTCGAGTACGGCCTTGCAGAATTGAGCAAATTTTACGGACGACCCAACGAAAACTACAACGCTTCCAATCTTCCATTCGGCGACTTTTCTTACCTGACCGATGTGATCTACAATCCTTTGGCTTTCAACTATAACATGCAGGCTGACCCAGACCGCGGTGACGAGCAAAGCCACACTGAAACCTCCCACGATCGAACCATTGACGTCTCTGACACTTCCTCCGACGAAGACGACTCGCGCGCCGAAACTGAAGACACACCCGCCGCCATGGAAACTCAGATCATGACTGTCGGCGACTGTCAGATCGTGAAACTACCGCCCAATAGCGAGGAGAACGCGGACAAAGCCGACCAATCACCGGAGCCCAGCGTCACCTCCTCGACCAATAGCGCCGTCACGATCACACCAATCACAACAGTCGGGGACTGCACCATCCGACCCGTAGAGAACACTTAG
Protein Sequence
MQGLASDKTFHLKWNNHLQNLSQLFTTIYSSSALADVTLSCRDGTLKAHKLVLSACSPYFEQIFKENPCQHPIVILKGIPFSEINLLVEFMYKGSVDVQELDLQSLMHTASELEIRGLAYEARDNAAQLLNVNLEYPSYPQTSTSTQAQAFPQARTDVERLKQIHMYQQSMMRAEEIRRRRREDPPNTNTAVNNILAAAAREMEEARHAARAERAVSIQTEQDQAAAREMEEARHAARAERAVSIQTEQDQVVHPASSTTNTMEAKRDVEDDRPKKRVSILSPEDDKLKVKKKPMTVRFQEDVKGEERSKLTSPGAPIEKNESHPSGIKVVQLAVLQKQSNENDDSDEKKLVMDEDEETDSSGSISDSATNDQQEGRPHVCEVCDLRFQRSSHLNRHRLTHTGERPFTCGGCGRSFARSDKLRVHTKICEREDPTVDMANDTSFKRENNSNAEVMSGMVRTTHRESGHLVFTPSGDVMLPPRTAPLVLNASLEPVRNELTADNILEPPRRGRGRPRKTPLPMTPKIKKRRGRPPKTSLDMEGCVLTGGTVLGPSAAAVANLSPAGQQLLLKRKRGRPPKNYFMPSRPGMDFDLPLEYGLAELSKFYGRPNENYNASNLPFGDFSYLTDVIYNPLAFNYNMQADPDRGDEQSHTETSHDRTIDVSDTSSDEDDSRAETEDTPAAMETQIMTVGDCQIVKLPPNSEENADKADQSPEPSVTSSTNSAVTITPITTVGDCTIRPVENT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00910139;
90% Identity
iTF_01528810;
80% Identity
iTF_01529342;