Xspa001472.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352223.1:332892-342237[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.4 79 4.2 3.1 1 23 286 309 286 309 0.94 2 12 2 1.1e+02 3.8 0.8 2 23 335 356 334 356 0.95 3 12 0.021 1.2 10.0 1.4 1 23 376 398 376 398 0.98 4 12 0.012 0.68 10.7 0.1 1 23 402 424 402 424 0.88 5 12 0.078 4.5 8.2 0.7 1 23 428 451 428 451 0.93 6 12 1.7 99 3.9 0.3 1 20 526 545 526 549 0.88 7 12 0.00051 0.029 15.0 0.6 1 23 574 596 574 596 0.98 8 12 0.00014 0.008 16.8 1.5 2 23 619 640 618 640 0.96 9 12 0.0071 0.4 11.4 0.9 1 23 644 666 644 666 0.94 10 12 3.1 1.8e+02 3.1 1.4 1 20 670 689 670 693 0.92 11 12 0.0024 0.14 12.9 3.7 1 23 699 722 699 722 0.96 12 12 0.00074 0.042 14.5 1.5 1 23 729 752 729 752 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTCGCTGATGTGACTGTGAAAGAAAGCCCCGGGCTGTGCCGATGCTGCCTCTCGGAAGGCTGCTACAAGGATCTCGGCACGGAGTATGCTTGGATGAACGACACAGAAGTTTATGCCGATATGCTGCTGGATTGCTTTGATATCGGCATAACCCAGCACAACGAAGGCCCCAACGGCCCCAAGCGTCTCATCTGCGAGGTGTGCATCACGCGCCTGCGAGACGCGTGCAACTTCAAGAAGCAGGTCGTGGACTCGGAGAAGAAGTTCATCGACATGCTCGGACGGGGAGAGTTTAGGCATTTGGAGAAACAGACTGTGATGCTGCCAATGTACTCTGCGCCGATGAAGGCGGAGACGATTGAAGAGGTGACCGTCAACGAGGAGTATGATGACACACACGTCGAGTTTCTTGATGACAACGATTTCACTGAAGACGATGAAGTGAAGACCGAGGGTCCATCGAACCCACTACCCTCCACATCGGCAGTCAAACGAGGTCGTCCTAAGAAGACAGACAGCGTTCCCGAGAAGAAACCCAAGATGAAGGGAAAGGCCAAGATGCCCAAAGGACCTCAAGGATCACTCAAAAACGTACAGTCTTATAAGCTAGGTGACTCTATTGCCTGTTCCAAAACAACTCCCTACACCAGGGAATATGTCACCAAGTCAACTAGTTCATACGTATACGACACTAACAGAGTACTTGAAAGAACATTTTCCTTTATAGGTGGCAAAGCAGAGGCACCGAGTAAGTCCTCAAAGTTAAGCCGGAGTCAAAACATAAAGGCGAACATCGCTACCATCCTACAAAACACAACAGTCCTCCCATTCAGATGGCACAAGCAGTTCTTTATGTGTTTCTACTGCCATCTCCCGATACAAACGTTCAAAAAACTTAAAGACCATATGAGTTTGCAGCACAAAAACCCTACTATACCACCTATAGTCGCGTTATTGAAGAAAGACGAGAAGGTCAAAGTAGATGTGACCACAATCACATGCAAGATATGCAAGCACGAACCAAGAGACTTCAACGGATTGATTGAACATTTGAAGTCTCATTACAAGCTGAAGATGAAATCTGATAATGGAATCATACCGTTCAAACTAACAGACGGTTACAAATGTGCGGTTTGCAACGACACATTTCAGTATTTCGTTAAATTAAACCAACATATGAACCAGCATTATGGTAACTACGTCTGTGAAGTTTGCGGCAAATCTTTTCTTAGCGGAGATCGGTTGAGATCACATGCGTTACTGCACACGGCTAATTTCTCTTGTACTTTGTGCTCTGAAACCTTTGATACTAATATGAAGAGAGCTAATCATACAGCGAGAGTGCACGACAAGGAACAGAATTTTAAGTGCTACTTTTGCGCAGATTTGTTCCCTACAAAAGTTAGTAGGGTTGAGCATATAAAAGCTAGTCACGGTGCCAATCGTCCCGAGCCGGCGAGCGGCGAGCAACCAATCACATGCATTAAGCGAAACCGTTTGGTTAAGATGAATACAATCGCCATAATGCAGTATTCCACCGCCCTACCCTTTAAATGGCATCGCCAATCATATCTCTGCTTCTTTTGCAACGCCCCACTTAACACGTTCGATGCTCTCAGACGCCACAATGACGCGGAGCATAAAAATATTAATATACGTTCGATCGGCGTGCTTATTAAGAAGGACGATAGAGTCAAAATCGATGTCGCTGACTTTAGATGCAAACTTTGCGATATGCATCTCGATGATGTTGATGATTTGGTGCGTCATATGAAGGTTCACGGGATATATTTCTATGAGGCTGTAGGCTGCGGGGTGATACCATATAAACACAAGGCTGGGTCGTGTCAATGCGCGGTTTGCGGGGAATCATTCAAATACTACATAAAACTGAACCAACACATGAATGAACACTTCGGTCAGCACGTTTGCGAGATATGTGGCAAATCTTTCCTCAGCACTCGTCGTTTGAAGATCCACGCGCTCTCTCACGGCTCTGGTTTCCCTTGCAACCGTTGCCCGGACACTTTTGACTCTTATTCCAAGAGGAAGAATCATTATTGGAAGGTCCACGGCATTCCCAAGATACACAAGTGTAGTTATTGCCCGGAAACCTTCTCCAACTACGGTTCTAGGACTCTGCATTACCGTTATTCTCATGATGTCGATACTCCGATCTTCCACTGCCCGGTTTGCGCGAAGACGTTCCGTCTCGCCAGCAAGATGCAGTACCATCTTAATACTGTTCATGACAAATCTTAG
- Protein Sequence
- MEFADVTVKESPGLCRCCLSEGCYKDLGTEYAWMNDTEVYADMLLDCFDIGITQHNEGPNGPKRLICEVCITRLRDACNFKKQVVDSEKKFIDMLGRGEFRHLEKQTVMLPMYSAPMKAETIEEVTVNEEYDDTHVEFLDDNDFTEDDEVKTEGPSNPLPSTSAVKRGRPKKTDSVPEKKPKMKGKAKMPKGPQGSLKNVQSYKLGDSIACSKTTPYTREYVTKSTSSYVYDTNRVLERTFSFIGGKAEAPSKSSKLSRSQNIKANIATILQNTTVLPFRWHKQFFMCFYCHLPIQTFKKLKDHMSLQHKNPTIPPIVALLKKDEKVKVDVTTITCKICKHEPRDFNGLIEHLKSHYKLKMKSDNGIIPFKLTDGYKCAVCNDTFQYFVKLNQHMNQHYGNYVCEVCGKSFLSGDRLRSHALLHTANFSCTLCSETFDTNMKRANHTARVHDKEQNFKCYFCADLFPTKVSRVEHIKASHGANRPEPASGEQPITCIKRNRLVKMNTIAIMQYSTALPFKWHRQSYLCFFCNAPLNTFDALRRHNDAEHKNINIRSIGVLIKKDDRVKIDVADFRCKLCDMHLDDVDDLVRHMKVHGIYFYEAVGCGVIPYKHKAGSCQCAVCGESFKYYIKLNQHMNEHFGQHVCEICGKSFLSTRRLKIHALSHGSGFPCNRCPDTFDSYSKRKNHYWKVHGIPKIHKCSYCPETFSNYGSRTLHYRYSHDVDTPIFHCPVCAKTFRLASKMQYHLNTVHDKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -