Xspa000957.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352207.1:3146079-3153290[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.065 3.7 8.4 7.6 1 21 271 291 271 293 0.93 2 12 6.1 3.5e+02 2.2 3.9 1 23 300 323 300 323 0.89 3 12 0.8 46 5.0 2.7 1 23 327 349 327 349 0.96 4 12 0.00028 0.016 15.9 6.2 1 23 354 377 354 377 0.97 5 12 0.0022 0.12 13.1 1.3 1 23 381 404 381 405 0.95 6 12 3.6 2.1e+02 2.9 0.2 3 21 418 436 417 441 0.89 7 12 0.069 3.9 8.3 0.6 3 23 451 472 449 472 0.94 8 12 0.029 1.6 9.5 0.1 2 23 492 514 491 514 0.96 9 12 2.5e-06 0.00014 22.3 0.6 1 23 529 551 529 551 0.98 10 12 0.0004 0.023 15.4 0.6 1 23 557 579 557 579 0.93 11 12 3.3e-05 0.0019 18.8 1.2 2 21 585 604 585 606 0.94 12 12 0.0013 0.076 13.7 1.0 1 23 612 635 612 635 0.98
Sequence Information
- Coding Sequence
- ATGAGTAATAAAATATGTAGAATATGCTTACGGACAGGCTTAGAAACAAGAGATATTTCAAACACACTGTTCGATTTCCATGATGAAATAACTGAATTTGAGAGGCTCCCTACCAACCTGCATGAGCGCCTACCGCCATCTTCACTAGGTTTTAATGATCAATCTTCAATGATACTATTCAGCTTAATAAATGGTCAACTAGAACCAATACTTGATACAATCAAAGTGGAAAGTAATGAGTCAAGCCGACTTGAGCCAAATATTATGACAATCAAAGTAGAAAATGAGTTTGAACTGGATTCAGAAGCCACAGATGCATTGCAGACAGAAGATGAGGTTCAATACAGTTTTATGCACACAGATGAGCTAGGTAACGGTTATGTTGCAAGAGTTTATAATGTATCAGAAATAATGAATAATCAAGATACAAATAATTATGCAGAGCCAGAAAATGTATCCAAGGCAGAGCATACAAAAACAAAATACAGTTTGTCTAAATCAGAAGATCAATCAACACAAGAAAATAAATTGGAGAAAAAACAAGTAAAATTGGAGGATAATACAAGTGATTCAGATGTTTCAAATGATTCTGATACTGAAATGATAAATGAGTTAAAGCAAATTATATCTACAACAGAGTCAAAATTCAAATGTAAAAAAGAGAAAAAAGGTCGCAAAAAACCAAGGCAGCCATTGAAAAACCTAAAGGACTTCGAGAAGATCTTTGACATTCAAATATTTGCTAGCGAAGAAGAAGCTAAACAAGAGATGCAGCTGAGAAAGTCTTCTGAGCCATATCTATCGTCTGATCATAAGTGCGAGATTTGTCACACTGTTTTCAAATACTCTAAGCTGCTGGAGTATCATAAGAAATGTCATAGTCCATCATCAGGAGAACATGTATGTTCCGTTTGTTCAATGAGATTTCATACTAAATTGGCAACAAGCAAACACAAATACAGCGCACACTATGGAAAGTTTAAATGCAAAAAGTGCCCCCTGATCACCTACCAAAAAGGTGTAATGCTTTCTCACTACCAACACCACGCAGGCGCTATATATTCATGCGAGCATTGTGACCGCACCTTTAAGCACATATCGACGTATAAAACGCACGTGCGCCTTCGACACAGGAGCGAGCATGTGTGCGTGACTTGCTCGCGAACATTCGTGTCCGAGAGAGGACTGATAGCGCATAGGAATATGATACATCATACTAAATCCAAAGTGGACACAGATGCTAAAGTGCACTGTGAGCCTTGCGATCTGACGTTTGCAGACGAAGATGTTTATACCTTGCATATTATGAATACGGAAAAACATAGGAATTTGGCCAAAAATATCATTGCTTGCCAAACGTGCGGAGCGAGATTCGAAACAACCAAAGATAGGAAACAACACAGGCAGTTGTTGCACCCGCCACATCTACCGAGCAGAACTGAGAGAATTTGGAAAAATGGGAAAGCAATGGACAAGTGCCCAAAAtgtaacGCGTCAGGGTCTGGCCCCGCGTGGCTGTACAATCACTACAAGAGCGATCATCCCGACGCGTCCTACTACGCGGAGCTAGCTCACAGACGGGTCTACATGTGCGACACTTGCGGGAAACGATATACTACTTTAAACGCTCTCCGCGACCATATAAACACTCACACGGACACGAAGCCCCACGCCTGCGACGTCTGCCCGGCGCGGTTCACCTCCCGCAGCAAACTGCAGAACCACGCCGCTTACCACCAACCGGCCAAGCGCGAGTGCCCGCTGTGCGGGAAGAAATACGTCAGCGCGTCTAACCTTAGCAATCATATGCAGTGTCACACCCAAGACCGACGTTATAAATGCTCTCTGTGCCAAAAAGGGTTTCTCCACGCGGCGACCTTGCGCGAACATGTGCGCAGCGTACATCTCAACATAAGGCGCGAACGAAAACCTCGCAAGCGGGAAACTCACACTAAGGCAGTGGACCAGTGA
- Protein Sequence
- MSNKICRICLRTGLETRDISNTLFDFHDEITEFERLPTNLHERLPPSSLGFNDQSSMILFSLINGQLEPILDTIKVESNESSRLEPNIMTIKVENEFELDSEATDALQTEDEVQYSFMHTDELGNGYVARVYNVSEIMNNQDTNNYAEPENVSKAEHTKTKYSLSKSEDQSTQENKLEKKQVKLEDNTSDSDVSNDSDTEMINELKQIISTTESKFKCKKEKKGRKKPRQPLKNLKDFEKIFDIQIFASEEEAKQEMQLRKSSEPYLSSDHKCEICHTVFKYSKLLEYHKKCHSPSSGEHVCSVCSMRFHTKLATSKHKYSAHYGKFKCKKCPLITYQKGVMLSHYQHHAGAIYSCEHCDRTFKHISTYKTHVRLRHRSEHVCVTCSRTFVSERGLIAHRNMIHHTKSKVDTDAKVHCEPCDLTFADEDVYTLHIMNTEKHRNLAKNIIACQTCGARFETTKDRKQHRQLLHPPHLPSRTERIWKNGKAMDKCPKCNASGSGPAWLYNHYKSDHPDASYYAELAHRRVYMCDTCGKRYTTLNALRDHINTHTDTKPHACDVCPARFTSRSKLQNHAAYHQPAKRECPLCGKKYVSASNLSNHMQCHTQDRRYKCSLCQKGFLHAATLREHVRSVHLNIRRERKPRKRETHTKAVDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -