Xspa016948.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352217.1:3114659-3123788[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00011 0.0061 17.2 4.1 1 23 274 296 274 296 0.98 2 12 0.00027 0.015 15.9 1.1 1 23 304 327 304 327 0.94 3 12 2.6 1.5e+02 3.4 0.8 1 23 331 354 331 354 0.93 4 12 0.21 12 6.8 1.9 1 23 424 446 424 446 0.98 5 12 0.0026 0.15 12.8 2.1 2 23 455 477 454 477 0.96 6 12 0.021 1.2 10.0 0.5 1 23 481 503 481 503 0.97 7 12 0.0014 0.079 13.7 2.2 1 23 508 531 508 531 0.96 8 12 0.096 5.5 7.9 1.0 3 23 537 558 535 558 0.88 9 12 0.24 14 6.6 0.1 3 23 660 681 659 681 0.96 10 12 1e-05 0.00058 20.4 0.6 1 23 690 712 690 712 0.98 11 12 0.0026 0.15 12.8 1.1 3 23 720 740 718 740 0.96 12 12 1.5e-05 0.00083 19.9 2.5 1 23 746 769 746 769 0.98
Sequence Information
- Coding Sequence
- ATGTGGGAAGTAAAAGCCTGTGCTGTTTGCCTAAGCACTGGCATTCGATTGTACAGTTTAAACACAGGCAATCTGAGACATGAATTCAATTCCATTTCCGGGCTGCAGACTACCACAAGAAGTGGTATGCCGGATCACCTGTGCACAGAATGCTGTGCTTTTGTGAAGAAATTCATCCACTTCCAACAGAAATGTCAACGTGCCCATTACACTTTGGAGCAGTTGTTGGTCAACAACAAAGAGATAAAAAAGTTCCATGTAAAATTGTTAGACCGCAATCAGCTCGGAATAATGCCGTCCCTTTCATTTGTTGATCTGAGCCGCACTCACTACGAGACCCACACTTATCAGAACACAACATCGGGAAGCTATCTACCTAAAGAACCACAAAACATACCTATCCTTCACTGCAGTACACTTACTAAAGAAGATACATTTGAAGATGTCATGACAAATGCAGCCGAGATTGAAATAAATGAAATCAAAACAGAAGATGTTATTAAAAGGGAGAAAAAGGAAAAGAGAAAAAAATATGACAATTTATTATCCTTAGATAGTGTATATAATGCTATTGAAAAAACAACTGCAGATAGTACAGTTGAGGAAAAGTTTGATATATCATCCAATTTTCTTGAATCAAACGACATGGATTATGATGATAATGATAATAATGATAATGAAATGTTTGACAATTCCTGTACATTAAATAATAAACCTAGTGGTTCTAAATTCAGTGAAGAGTATGCAGAAGTAGTACCTATTTCTGTGAAGGAGGCAAGAGCTGCGGTGGAAGTTCGGAAGGCATTTATGATTGGTGATCATAAGTGTGAAAGTTGCGGGCGAAGATATAGAACAAAACAATCTTTAAAAGCTCATTCAAGAATGCATGATAAACATTTCAAAGGTAACTTCCGCTGTGAGATCTGTGATTACTACTACAAAACCCAGTTTCTGTTAGAAGTGCATATGACAGACAAACACATGTACAAGTACCTCTGCAAATTGTGCCCAGAAGTTAGTTTTGACAAACTAACAGCGAAATCCCACTACCGCCAACGCCATCTGAACCAAGAGAAGGGAACTCGTTGGAAAGACTGCGATGGATCGAGCTGGTTGCGACGCAGACCTAAGAAGTCAAACACTAACAAGAAACGGAAATATCAGATCGCTATACCGAAAGATGTTTTTACTTACGAACCTATCAGTCCTACGGAACAATACTCTATTATTCAGGAACGTAAAAAAAGCCGTAACTACCTAGAAGCGAAATACAAATGCGAGCTGTGCTTCAGAGGTTATCGGCTGATGACAACTTATAGCAACCACATGGTGAAACATGACCCGTCGATATCAGGCAACTTACAATGTGACATGTGCAAGCTGTACTTCAGGGATCAGAGGAAGATGTACAAACACATGAACATGTACCATCTCAATAAGTATAGCTGTAAAAGTTGTGATTTCGTCTCTTCTAATAGGAGTCAAGCAGTGGCACATTACAAATGGCATTCAAACGTAACGTACGATTGTGCACATTGTGATAAAAAGTTTGTTAAGGCATCAACCAGGCTCACGCACATCCGACTGAAACACCCCTCCACGTCTATTTGCAATCTGTGTGGACACAGCTTCGTCAGTTCCGCGGGTTTGGTCTGCCATAAGCAGATCGCACACTCGAAAGAGGAAACAACAGACGTAGAAGGTAACGTGGCCGACACAACTAATCCTAACTATTGCGAAGCTTGTGACATTCTGTTCGCGAACGAGGAAGCATTCGATACGCATCTCGGCAGTTCCAGTAAACACGTCAAGACTAATATATCTGTTCAGAAGACGCAGCGCGACTCTCGCAAGCGCATGCGCCGCGAGATGGGCGGCCCCTCGCGGCCTCGCTCCAGAGAAGTGGGGCTTGTTGAGAAGAGAGTTAGGAACGGCACGTCCGAAGTACTCAACACTGGGGTCACCACCTCCAATAACTGCGAAATGTGCGGCAAATATCTAGTGAACGATGTCCAAGCTCGTCGACATTATGAGACGGAACATCCCGGTACAGACTTCCTCAGGCGGTACATGTGTGAAATATGTGGACATACTGCTAGGCAATACGCCAATCTCCTAGTGCATATGCGAACGCACACTAACGAAAAGCCGTATGGTTGTCCGCACTGCGATAGAAGGTTTAGCATGCTGAGCAACAGAGATCGACATCTTGTGGTTCACACGGGTGAAAAGCGGTATCAATGCCAGCACTGCAGCCGTCGCTTCACTCAGTCCAGCGCGGTGAAGCTGCACATACAAACTGTACACTTGAAGATACCGTACGCGCCCTGGGACAAGAAGAACAGGAAACGGAGGAAGGAATTGGAGGCGGCAGGTGTTTCCTCAGATCTAAACATGGTGGAAGCGCCCCCTATGCCGCTAATCCCGCAACCTCAGCCCAAACTAGTTCTGGACACGCAGGGCGAATATATAAACGCTTATATAACGTACAACGACGAGTAA
- Protein Sequence
- MWEVKACAVCLSTGIRLYSLNTGNLRHEFNSISGLQTTTRSGMPDHLCTECCAFVKKFIHFQQKCQRAHYTLEQLLVNNKEIKKFHVKLLDRNQLGIMPSLSFVDLSRTHYETHTYQNTTSGSYLPKEPQNIPILHCSTLTKEDTFEDVMTNAAEIEINEIKTEDVIKREKKEKRKKYDNLLSLDSVYNAIEKTTADSTVEEKFDISSNFLESNDMDYDDNDNNDNEMFDNSCTLNNKPSGSKFSEEYAEVVPISVKEARAAVEVRKAFMIGDHKCESCGRRYRTKQSLKAHSRMHDKHFKGNFRCEICDYYYKTQFLLEVHMTDKHMYKYLCKLCPEVSFDKLTAKSHYRQRHLNQEKGTRWKDCDGSSWLRRRPKKSNTNKKRKYQIAIPKDVFTYEPISPTEQYSIIQERKKSRNYLEAKYKCELCFRGYRLMTTYSNHMVKHDPSISGNLQCDMCKLYFRDQRKMYKHMNMYHLNKYSCKSCDFVSSNRSQAVAHYKWHSNVTYDCAHCDKKFVKASTRLTHIRLKHPSTSICNLCGHSFVSSAGLVCHKQIAHSKEETTDVEGNVADTTNPNYCEACDILFANEEAFDTHLGSSSKHVKTNISVQKTQRDSRKRMRREMGGPSRPRSREVGLVEKRVRNGTSEVLNTGVTTSNNCEMCGKYLVNDVQARRHYETEHPGTDFLRRYMCEICGHTARQYANLLVHMRTHTNEKPYGCPHCDRRFSMLSNRDRHLVVHTGEKRYQCQHCSRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEAAGVSSDLNMVEAPPMPLIPQPQPKLVLDTQGEYINAYITYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528618;
- 90% Identity
- -
- 80% Identity
- -