Xspa003453.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- ZNF275
- Assembly
- GCA_947086425.1
- Location
- OX352222.1:4127091-4137825[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0039 0.22 12.3 1.1 1 23 320 342 320 342 0.97 2 13 0.0023 0.13 13.0 1.0 2 23 350 372 350 372 0.97 3 13 0.56 32 5.5 1.6 1 23 376 398 376 398 0.96 4 13 0.00017 0.0098 16.5 0.6 1 23 403 426 403 426 0.97 5 13 0.31 18 6.3 1.2 1 23 430 453 430 453 0.90 6 13 0.031 1.7 9.4 0.2 2 23 466 488 465 488 0.95 7 13 0.008 0.46 11.3 2.9 1 20 495 514 495 519 0.93 8 13 0.00017 0.0095 16.6 2.1 2 23 540 562 540 562 0.96 9 13 0.0018 0.1 13.3 1.6 1 22 568 589 568 593 0.91 10 13 0.007 0.4 11.5 3.0 3 23 664 684 662 684 0.94 11 13 5.7e-06 0.00032 21.2 1.0 1 23 690 712 690 712 0.98 12 13 4.2e-06 0.00024 21.6 1.0 1 23 717 739 717 739 0.96 13 13 0.0019 0.11 13.2 1.0 1 23 745 768 745 769 0.96
Sequence Information
- Coding Sequence
- ATGTCGAAGACGTTGTGCCGAATATGTTTGCGTTGTGATGTTGTTATTGTTAATGATATCGAGGTTGCCCTTGCCGAATTTCATCAAGATCTGTGCGGAAATAATATTGACAAGGATGAAAATCTCATGTTCTGTACAATATGTAAATATCAACTAGTAAAGTTTTATAACTTCAAACAGAGGTGCAGGAGATCAGATAATATCTTGAAATCATGGAGGATTGCAAATGTCCCGGAAAGCATAGAAAATCTACACCAATCAGTCCCACCTCCATCCATAACATTCCAACACAAAAATGCTGTGTCAAAAACAATAGAATTCACACACACAGATATAGAACAGAACATAACTATCAAAATTGAACAAGATGATACAAAAATTGAAGATATTTTAGAAGCAAAATATTATTCAAATGAACAAGAATTAACGAATACAGAGAAAAATGAAGTGATTCTAAAAATAGAAGAAGATTTCGACGACGAAGTATACAACGATGATGATGATGATTACGAACCGGAAAGAAAAAAAACCAAAAGCAAAACTATTAAAAGCTCAAAAACAAGAAAAAAACAAAAATACACTTTCAAAGAGGAATTAAGTGATAAATTAGTTAAAAAGAACAATAAAAACCAGTTAAAAGACAGGTTAAAGTTAAAAGAGAGGGTGGTGAGTTTGCTTCGGAACGGAGAGTTTCAAGATCTCGGGGTGACAATGAATGAGGAGGTGTTCTTAAAGATGTTTGAGAAGTGTGAGAAAACTGGCTTGAGGAGTATGCTGCCTCTTAAACCAGATTCTGCAGACGAGCGTCAGAAACTTCGTAAGTTCCTTCTCTATCTCCACAAGAAGAACAATTCAGAATATGAAGATATCTTCTCCGTGGAACTATTGGACACAGAGGATAAGAAACTCGCAGAGTTTCGCAGAAGGAAGGAGAGTAAAGAGTATATAGACGCTGAGTTTAAATGTGAGAAGTGTTTTAAAGTTTTCGAAGTGCTAAGATTGTTGGAGTACCATAATAGATGGCACGAGCCTAGCACTGGTTCTAACGAGTGCGATATATGTGCGATGCGGTTCGCGACTCGCAAAGCATTGGCTCAACACCACAAGACAAACCACTGCGCCCTCTACCGGTGTAAACTGTGCCCCATGCACACTTACAACTCTGCGGTCATGGTAAACCATTACAACCAACACAAGGGGATGGAGTATTCCTGCCCTGTTTGTTTGAGCGTCTTCAGCAACAAGAACACGTTGAACAACCACCGTCGCCAGGCGCACCGCACCGCGCACGTGTGTCCGCTCTGCGCGAGGACATTCGTCTCGGAGAAGGGACTCTACTTCCACACGAGACTCAAACACAAGGATGAATGTGACACTGTGCTAGAGAACGGTGTGTCGTGCGACAAGTGCGACGCGCGGCTTTCCTCGGAACAAGTGCTCATGACGCACATGAGGCAGATGCACGCCAGCTCACAATCCATCCACAAATGTTTCCACTGCAAGGAGATTTTCGTCTCTCTCGAGGAGTTGAAGAAACATAAAGTGGAGAAGGACCATCAGAGGCCGAGACCGAACAAAAGCGAGGAAAGTCAGAGTACATTAGAGGGAGACGGAGCGAGGTGCGAGGAGTGCGGACGTACATTCAACTCTCGGAAGAGCTATCTACGACACTTCAATATGAACcacaggactaataggatTCATAAATGCGGCTTCTGCGGCGCCAAATTCAGCGTGGCGTCTGAGCTAGAATCGCATAGAAACCAGCTCAGCCACCACAGGAAGGTTCGCTACGAGCGCAAGACGAGGATACAAGCGTCACAACCCAGACTGCACTGTAACGATCCACAACATCCAACTAACAAATGTCTGTTGTGTGGTGAGCTGGTATCCGCCGCTCGTACGAACACGATGTACCAGCACTTCGTGACGTCACACCGCGACACCCCGTACGCCGCCGTGTACGCACAACCACACAACAGACATCTCTGCGATCAGTGCGGGAAGACATTCAAGGACCTGACCTTCTTCCTAGACCACAAGAACCTCCACACCGGGGCGAAGCCCTACCCCTGCCCCACCTGCCCCCGCGCCTTCAGCACGAGACGACATCTGAGACTGCATGTAGAGAGGCACGCGCCGCCGAGACACATGTGCAGAGAGTGCGGGAAGATGTTCAATAGTGCAGCCAATCTGTTTGCACACAGGCGGGGTCATATCGGCGATCGTCGCTTCAAGTGCGAGATCTGTAGTAAGGGTTTCCTCCACCAGGCGGCGCTGAACGAACACGTGAGGGGAGTGCATCATCATATACGACGGGCTAGGAAACAACACGACAAGTGA
- Protein Sequence
- MSKTLCRICLRCDVVIVNDIEVALAEFHQDLCGNNIDKDENLMFCTICKYQLVKFYNFKQRCRRSDNILKSWRIANVPESIENLHQSVPPPSITFQHKNAVSKTIEFTHTDIEQNITIKIEQDDTKIEDILEAKYYSNEQELTNTEKNEVILKIEEDFDDEVYNDDDDDYEPERKKTKSKTIKSSKTRKKQKYTFKEELSDKLVKKNNKNQLKDRLKLKERVVSLLRNGEFQDLGVTMNEEVFLKMFEKCEKTGLRSMLPLKPDSADERQKLRKFLLYLHKKNNSEYEDIFSVELLDTEDKKLAEFRRRKESKEYIDAEFKCEKCFKVFEVLRLLEYHNRWHEPSTGSNECDICAMRFATRKALAQHHKTNHCALYRCKLCPMHTYNSAVMVNHYNQHKGMEYSCPVCLSVFSNKNTLNNHRRQAHRTAHVCPLCARTFVSEKGLYFHTRLKHKDECDTVLENGVSCDKCDARLSSEQVLMTHMRQMHASSQSIHKCFHCKEIFVSLEELKKHKVEKDHQRPRPNKSEESQSTLEGDGARCEECGRTFNSRKSYLRHFNMNHRTNRIHKCGFCGAKFSVASELESHRNQLSHHRKVRYERKTRIQASQPRLHCNDPQHPTNKCLLCGELVSAARTNTMYQHFVTSHRDTPYAAVYAQPHNRHLCDQCGKTFKDLTFFLDHKNLHTGAKPYPCPTCPRAFSTRRHLRLHVERHAPPRHMCRECGKMFNSAANLFAHRRGHIGDRRFKCEICSKGFLHQAALNEHVRGVHHHIRRARKQHDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -