Xspa015336.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352205.1:2598791-2601677[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.1e-07 6.2e-06 26.6 2.9 1 23 260 282 260 282 0.99 2 11 0.0018 0.1 13.3 10.1 1 23 288 310 288 311 0.95 3 11 0.0098 0.56 11.0 0.2 3 23 322 342 321 342 0.98 4 11 0.0016 0.092 13.5 4.6 1 23 349 371 349 371 0.97 5 11 0.012 0.69 10.7 1.7 1 23 377 399 377 399 0.99 6 11 0.0035 0.2 12.4 3.9 1 23 405 428 405 428 0.96 7 11 0.05 2.8 8.8 1.9 2 23 434 453 433 453 0.95 8 11 0.00036 0.021 15.5 5.0 1 21 459 479 459 481 0.94 9 11 6e-05 0.0034 18.0 3.2 3 23 489 509 487 509 0.98 10 11 0.00016 0.0089 16.7 1.0 1 23 515 538 515 538 0.97 11 11 0.0047 0.27 12.0 2.6 1 21 544 564 544 565 0.96
Sequence Information
- Coding Sequence
- ATGGCTAATGTAAAGGGTAGAGTAAAAGCACCCAAAAGTGCCAGTAGTAGGCGAGGCCGCGGTAATCCAAAACAATCCTTGACAGGTGTGAAAAAATCTACATATTCACCAAAGAATGTGATAGACAATAGTCTCTCCAGAAAGGCTGGCGATCTCACTGCATTACAGCAAGTTTTGATGCAAGATGAGCCTATTGACTTTGATAAATGCACTGAAAAACATCTTAAACTGAGTCAACCACCGAAAGTACCAAAGAAAAGAAAAAGTAGGAGTAAACCTAAAGTAGAAAAAATTCCAAGGTTTTCCACAAAAAAGGGAAGACTTGTTGGACCTAGAACGAGGGAAGGCTTAAAGATGATTGACACTATTCTGAAAGGAGAGCTCATGATTGAAATTGAATTACCAGCAAAAATAGTTGAGAAAGCAGTTGTTACAAATGTAACCAATAATAACGAAGTGGGAATTAATAATCAAAATGGCTCAATATTACAGTCAACCCATGAAAACAAGAAAAAATCTGAGTTAAAACATAATAAAAATTTTGAGATCCCTCAAAATAATAGCAAAGGAATACAAACTAGAAGTAAACTCACACTCCCAGTCAAAGATGAAAAAATTAAACCTAAAAGACAAATAAAAACCAAAACTATGAAGATAGACAAAAAATCAACAAAAAATAGTGAAAGGAAGATCATTAAAAGAAATAACCAAAGTGAAAAAGCAGTGAAAACGAAGCAGGTTACTCTCAGTAATGGATTAGTTCTCACTCTGGCACTGTTTCAGTGTGATTACTGCCAGAAAATGTTCAGCAGCAAAGCATCACTACGAAGACACATGTACACTCATCTCAAACTGCAGCCTCACCGCTGCAAGCAGTGCTCAAAGAAATTCCGCTATAAAATGCATCTACAAAACCACATAGACAGACACCACAAAGATCTCAGAAACCTTGAGCCGATGCTCTGTCAGATATGCGATAAAGAATTCCTGCTACAAGAGAATCTTGAACTCCATTTAACAACTCATATCAAAAACGAAAACTCGTTCAAATGTGTGTATTGTGACAAAAAGTTCTCATATCATTTACTTTTAACACAGCATGAGAAACAGCATCTCCTTACTGGCAAGTATCAGTGCTCGGTCTGTCAGCTAAGCTTCGAATCAATCAACCGCTTGAAGTTCCACATGAAAACTCATTTGAAAATTAAAGATTACATCTGTCAACATTGTGGGAAAGAGTTTTTAAGAATGAATTCATTGAGAAGGCATGTTCAGATATGTCACAGCGGACACCGTCTACAGTGTCCGGTTTGTTTAAAGAAATTGAAGGGTCATTTAACGGAGCATATGAGGACACATAAGCAAGCAAGGCCTCACGAGTGCGACCAATGCGGGCGACGGTTTACCCAGTCCACCCAACTAACTGTCCATAAAAGATGCCATACAGGTGAAAGACCTTTTGGTTGCAAGATCTGCAATCGCCAATTTACCCACTCGAATTCTCTGATGCTACACATCCGCCGGCACACTGGAGAGAAACCATTCCAGTGCACCCTATGTCCAATATCTTTCTCCCAACTGCCTCATATGAAAACCCACCTCATAAAAATCCACAAGCAAGACACTCCATACAAATGCCCTAAGTGCAGCGCGTTCTTCAAAATGAAGAAGCACATGGAAACACATCTGAAGAACTGCAAAGTCGGCGACCGAGAGCTGACGTTTGAGGAGAAGATTCAGGCTTCTGTGGCGTATGAAGAGGTCAAAATCGAGACGCCAATGAGCCTATCTCGGATGCGGTACCTTCTGGCTCTGCTATTGACCATGATTGGAAACAAAAAGAGCCTGAAATTTCTAGGATTCAACAAACGGCCAATTGAAGAGTTACTCCTCGAGTCGCTCGAAGCCATTGGTCTGAAGCCGTGTAAAGACAATTCTCTGTCTCCTATTATTCGACTGAAGAACAACATCCATCTCCTTCTAGAAGGTACCATCCCCGCGTACCAAATGCAGAAGTTTAAGAAGGAGCATAAGACTACGGAGGAAATACTGGAGATATTGACGAATGAAAAGAAGAATGATTGA
- Protein Sequence
- MANVKGRVKAPKSASSRRGRGNPKQSLTGVKKSTYSPKNVIDNSLSRKAGDLTALQQVLMQDEPIDFDKCTEKHLKLSQPPKVPKKRKSRSKPKVEKIPRFSTKKGRLVGPRTREGLKMIDTILKGELMIEIELPAKIVEKAVVTNVTNNNEVGINNQNGSILQSTHENKKKSELKHNKNFEIPQNNSKGIQTRSKLTLPVKDEKIKPKRQIKTKTMKIDKKSTKNSERKIIKRNNQSEKAVKTKQVTLSNGLVLTLALFQCDYCQKMFSSKASLRRHMYTHLKLQPHRCKQCSKKFRYKMHLQNHIDRHHKDLRNLEPMLCQICDKEFLLQENLELHLTTHIKNENSFKCVYCDKKFSYHLLLTQHEKQHLLTGKYQCSVCQLSFESINRLKFHMKTHLKIKDYICQHCGKEFLRMNSLRRHVQICHSGHRLQCPVCLKKLKGHLTEHMRTHKQARPHECDQCGRRFTQSTQLTVHKRCHTGERPFGCKICNRQFTHSNSLMLHIRRHTGEKPFQCTLCPISFSQLPHMKTHLIKIHKQDTPYKCPKCSAFFKMKKHMETHLKNCKVGDRELTFEEKIQASVAYEEVKIETPMSLSRMRYLLALLLTMIGNKKSLKFLGFNKRPIEELLLESLEAIGLKPCKDNSLSPIIRLKNNIHLLLEGTIPAYQMQKFKKEHKTTEEILEILTNEKKND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00119870;
- 90% Identity
- iTF_01528588; iTF_00267497;
- 80% Identity
- -