Xspa001592.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- ZFY
- Assembly
- GCA_947086425.1
- Location
- OX352223.1:1463260-1466696[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.4 77 4.3 0.2 3 23 160 181 159 181 0.94 2 17 9.5 5.4e+02 1.6 1.5 1 23 251 273 251 273 0.88 3 17 7.4e-05 0.0042 17.7 1.1 1 23 277 300 277 300 0.96 4 17 0.025 1.4 9.7 0.2 1 21 304 324 304 325 0.94 5 17 0.00034 0.019 15.6 0.3 2 23 331 353 330 353 0.97 6 17 0.13 7.3 7.5 3.7 1 23 360 383 360 383 0.94 7 17 8.4e-07 4.8e-05 23.8 0.9 1 23 387 409 387 409 0.98 8 17 0.0002 0.011 16.3 2.3 1 20 415 434 415 435 0.96 9 17 4.5 2.6e+02 2.6 0.1 3 23 674 695 672 695 0.87 10 17 1.1 63 4.5 0.0 3 23 721 742 719 742 0.89 11 17 0.79 45 5.0 5.3 1 23 765 787 765 787 0.93 12 17 0.0098 0.56 11.0 4.6 3 23 793 813 791 814 0.93 13 17 0.049 2.8 8.8 3.5 1 21 818 838 818 839 0.96 14 17 0.48 28 5.7 0.3 2 23 846 868 845 868 0.92 15 17 1.9 1.1e+02 3.8 0.8 1 23 875 898 875 898 0.92 16 17 4.6e-07 2.6e-05 24.6 2.8 1 23 902 924 902 924 0.98 17 17 9.9e-05 0.0056 17.3 2.6 1 20 930 949 930 951 0.96
Sequence Information
- Coding Sequence
- ATGACAGGTGGTGTCAAACGGTTGGTTGAATTCAATGACAACTCGAAATCCATTGTAGATGATTGCATCGTTAAAGATGCTACTAAAACGGGACAGAGCGAAGTCATCAATAAAGAAAATAAACTATTATGCGACACTGTTAACCAATCTTTAAACAATAAAACAAGTATAAAGCTTTCTAAAGATAAAAAGAATATCCACTCCCAACAAAATAACGATGAAGCGACAGATCCAATTAGAGAAAAATTGATCAGGACACGTCTCGGGAAAAAAAATGATCCAAACGCAAAAGGCTCAAAAATAGAAAAAACTATCCCTGTTAAAAAGCGCGTTAGTAAAACTGCTACTAACAAGGAAAGCCGACCAAAACGTGACAGACGTTTCGTAGACAAAAAGTTCCTCGAAAACGCAAGGCTGTTAGTAAAACACACTACAGCGATCCCTATAAGGATCCAACTTTCCTCTATAGATGTCGCTTGCTTTGTTTGCGAAAGTAAGTTCGACGATCCATTTGCGTTCAGAGATCATTTTCTTTCCGAACATAAAAATGCCGATAAAACTAAAGGCATGCATTTGTATAATAACGTTCAGACTCGCGTTGATATCACTGACTTGGCCTGTACTGAATGTACAGAACAATTAGACACCTTAGAGGTCGCAGCTCAACATCTCATTCAAGAACATAAAATAAGTATTGATCTGGAAGAGAGATTGGGTCTCGTGCCTCTGAAATTTCTTCACGTAGGTCAGTACATTTGCGCTGTATGTCCCAGAAAGTGCTTATCTTTCCGAGATTTGTACAGACATTCTGGCTCCCACTTTCCTATTCATGTATGTGAGATTTGCGGGAAAAAGTTCGAGTCTACCCCATCGTTGCGTAGTCATCTCAGTCGAAATCATGTGGAGGGACATCCATGTCGAAATTGCAAGGCGGAATTTTCAACCGCTTTAGAATTGAAACAACATGTACGAGGTGGCTGCACTGGTGTCAAATGCAAAATTTGCAATATAACGTTCCCTTACTCGCAACCTTTGCAAAAACACCGGGAAACAGTCCACGGGGCACCTAAACGAGTCTACAAATGCACTGAATGCCATATTGTGTTTGAGAAACGAATGCAACTATACTTCCATACTAAGAGAGAACATACCGATCATCATAAATGTCTTCTTTGTGGTAGACCCTTCACTGACTCTGCGAGTTTAAAACGACACATGCTAGTGCACACAGATGAACGACCTTATAAATGTCATATTTGTCAACAAGCTTTCAAAAATAGATCATATTACAAAACTCATGTAGATGAGTGGACCACAACGGACGCTTGGGTTAGCGAAGTAACGCATACCAAGTCCCATGACGAGTGGATCATTACGGATAGTAGCGTCATTCAGACTGAGGTCAAGGAATTAAAACATGCTGATCCAGAATCAAATGAATGGACTAGTGACTGCACTCAATGGCTTAAGATTGAAATCAATGACGATTTGAAACCAAACGACCCATTCGTTTTCTCTAAAGATTTTGCTGAATCGGTTATGGTTGATAACCCAAAATCAAACGTAGTTGAATGCATAGTTACAGATGCCAGTATAACGAAACAAAAGAAAGTATCTATTAATAAAAAAAATAAACAATCCAGTGTAAAACAAACAGCTAAAAAAACAGTTGAGAACAAAACTGATAAAACGGTATACAACTATAAGAATATGTACTTTAAACCAAAAAACTATGATGCGTTAGATTTAGAAAGTGACCAGACGATCTGGACACATCTAGGAGGGGAAAAAATTGAGATAGTTGTGTCGAACGCAAAAGCCCCTAAAAATAAAAATGTTCACGAAAATCAAGCTAGTGAAAAGAACGATAAAACTTCAAAGCCAATCAAACAAAAAAGGAGTCTACCAAAATCTAACCGACTTATTGTAGACAAAAAGTTCCTCGAGAACGCAAGACTTTTAATTAAACACACTACAGCTATACCTATAAGAATACAGCTTTCCTCTATAGATCTCGCTTGCTTTGTATGCGAAAGTCAATTCGAAAATCCGTTTGCGTTTAGAGATCATTTTATTGCCGAACACAAAAATGCTGATAAAACTAAGGGCATGCATTTGTATAATAACGTTCAAACTCGCGTAGATATTACAGACTTGGCGTGTACTGAATGTACAAAAACATTGGACACCTTAGAGGCCGCAGCTCAACATCTCATTCAAGAACATAAAATACGCATTGATCTTAAAGAGAGATTGGGTCTCGTGCCTCTGAAATTCTTCAACTTTGGACAGTACATTTGCGCTGTATGTTCCAAAAAGTGCTGTACGTTTAGAGATTTGTACAGGCACTCTGGTTCGCACTTTCCTATTCATTTATGCGAGCTGTGTGGTAAAAAGTGTGAGTCTGCACCAGGACTGCGTTATCATTACAGAACACACCATGAGGAAAAACATCGATGTCGTCATTGCAAGGCAATATGTACAAGCTCTCTGGAGCTAAGACAACATATGCGAGGAGATGACTGCCCTGGTATCAGATGCAAAATTTGCAATGCAAAGTTCCTTGCCTCCGAAAATTTTATAAAACACAATGAAACTGTACACGGAGCGCCTAAAAGACTGTACAAATGTATTGAATGTGATATTGTATTCGAGAAACGAATACAGCTATACTTCCATACCAAGAGAGAACATACCGATCATCATAAGTGTCATCTTTGTGGTAGACCATTCACTGACTCTGCGAGTTTAAAAAAACACATGCTAGTGCATACAGATGAACGACCTTATAAATGTCATGTTTGTCAACAAGCTTTTAAAAGTAGATCTTATTATAAAAAACATATCGGTAAATGTAAAGTGTAG
- Protein Sequence
- MTGGVKRLVEFNDNSKSIVDDCIVKDATKTGQSEVINKENKLLCDTVNQSLNNKTSIKLSKDKKNIHSQQNNDEATDPIREKLIRTRLGKKNDPNAKGSKIEKTIPVKKRVSKTATNKESRPKRDRRFVDKKFLENARLLVKHTTAIPIRIQLSSIDVACFVCESKFDDPFAFRDHFLSEHKNADKTKGMHLYNNVQTRVDITDLACTECTEQLDTLEVAAQHLIQEHKISIDLEERLGLVPLKFLHVGQYICAVCPRKCLSFRDLYRHSGSHFPIHVCEICGKKFESTPSLRSHLSRNHVEGHPCRNCKAEFSTALELKQHVRGGCTGVKCKICNITFPYSQPLQKHRETVHGAPKRVYKCTECHIVFEKRMQLYFHTKREHTDHHKCLLCGRPFTDSASLKRHMLVHTDERPYKCHICQQAFKNRSYYKTHVDEWTTTDAWVSEVTHTKSHDEWIITDSSVIQTEVKELKHADPESNEWTSDCTQWLKIEINDDLKPNDPFVFSKDFAESVMVDNPKSNVVECIVTDASITKQKKVSINKKNKQSSVKQTAKKTVENKTDKTVYNYKNMYFKPKNYDALDLESDQTIWTHLGGEKIEIVVSNAKAPKNKNVHENQASEKNDKTSKPIKQKRSLPKSNRLIVDKKFLENARLLIKHTTAIPIRIQLSSIDLACFVCESQFENPFAFRDHFIAEHKNADKTKGMHLYNNVQTRVDITDLACTECTKTLDTLEAAAQHLIQEHKIRIDLKERLGLVPLKFFNFGQYICAVCSKKCCTFRDLYRHSGSHFPIHLCELCGKKCESAPGLRYHYRTHHEEKHRCRHCKAICTSSLELRQHMRGDDCPGIRCKICNAKFLASENFIKHNETVHGAPKRLYKCIECDIVFEKRIQLYFHTKREHTDHHKCHLCGRPFTDSASLKKHMLVHTDERPYKCHVCQQAFKSRSYYKKHIGKCKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -