Xspa003335.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352222.1:2938675-2945486[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0019 0.11 13.2 0.5 1 23 187 210 187 210 0.97 2 11 0.00017 0.0097 16.5 1.5 1 23 217 239 217 239 0.98 3 11 2.3 1.3e+02 3.5 2.5 1 19 243 261 243 266 0.92 4 11 0.00028 0.016 15.8 0.6 1 23 295 317 295 317 0.98 5 11 0.013 0.76 10.6 0.9 3 22 329 348 328 352 0.89 6 11 5.1e-05 0.0029 18.2 0.3 1 23 388 410 388 410 0.97 7 11 0.037 2.1 9.2 0.6 3 22 420 439 418 443 0.88 8 11 1e-05 0.00058 20.4 0.5 1 23 451 474 451 474 0.92 9 11 0.00061 0.035 14.8 3.5 1 23 480 503 480 503 0.94 10 11 5e-05 0.0028 18.2 1.6 3 23 512 533 510 533 0.92 11 11 0.0015 0.088 13.5 3.2 1 23 539 562 539 562 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTACAAAAAAGCATGCTATGCACCGGTTGCCTGGCCATGGACCGTCGAATGATACTTATTGACGGTGAATACAAAAAGAGATGTTTTTTGCAAATAATTAAGGAATTACAGTTATCTGTCCCGGACTTGCCACTCTGGCTATGTTGGGAGTGCGAGGCTAATATTAAACGATTCACTAAATTCAAGCTTCAAGTTCAGCGTTCATACCAAATTCTTCATGAACTAATAAAGGCTGATTATCAATTTGTACCAAAACTAAGCATCCATGAAGTTAGTAATATCTCAATAACAGAAGACACGGATGCTCAAACTACTGTCAAAACTGAGGAAATACCTATCAAATATGAAACAGACTTCTCCGATGATGACACACTTTTAGACATAAAAGAAACATTGCCCGAAAAACCCGTAAAGATTGAGAACCATAAGCAAAAAGTTAAAAGTAAAGTTAAATTGAAAAAGAAGATATATAACGAAGTAGAATTAACGGAGAAAGAGATTAACGAAGAAAGGAAAAATATGGCGTTAAGAGAAGATTATATAAATGCTATGTTCCGATGTGAAAAATGTCTCGTTTCGTTTCCAAATGAAGATGATATGAAGGACCATATATCTAAGAAACATGAATTGCATGCATTAAAATACAAATGCAGTATATGCGAGCGTTCGTTCAGCACAGAAGTCGCGTTCAGCTATCACCGTAGCAGACATTATAGGAGATACGAATGCGTTGTCTGCAGTTACAGCTGTACTAGCAAACTGGCTGTCAGGAATCATTGTGCGGCcacacatatacacagTGTAGGCGTTAAGAAACTGTTGAAAAACTATGGATTAGAAGAAAATGATGTGAATGGTAGTAAATCAGAACAGCGGTATCCATGCGAGCACTGCCCCAAAGTGTTTGGTTGGAAGACATCGCTTCGGAAGCACGCGGAGACGCACAAGATAGAAGCGGGCATCAAGCGGAAACCTTACTGCGAACCTTGCAGATTATCTTTCACAACTACTGCAAATCTTCAGAAACATGTTAAGACAAGTTCGAAGCATCAAATACAATTGAAACTAAGAAAGTTAAAGGAAACGAATCCAGATGAATCCAGTGCTAAGCAGATAGCTGATATCAAATCCAGCGTTAacagCACCCGTGAATTATTTCCATGTCCACAATGCGACAAGAAATTCCAATGGCGTGGAAACCTCATACGACATATGGACAGCCATGCGGCTAGGGCCAAGGGTGAGTTGGTGTGCCTGCCGTGTAATAGAACATTCTCGTCCATCGCAACTTACAAGCAACATAtgaagatcagcaagaaacatgccactgagaacgatttcaaGTACATGTGCAGTGATTGCGGTAAGAAGTTTGCGAGTAAAACTAAACTGAAGGATCATGTCGACTGGGAACATCTCAAGAACTTCGTACATACATGCCAGGATTGTCAGAAGGTATTCAAAACCCACACATCTTTATATCTTCACGGGCAAGTGGTCCATAAAAAGGCGAGCGCTCAGCATCTCTGTGAAAACTGTGGCAAATCATTCCCGAATCAAACGAAGCTACGTTCCCACACACAGGCGCTACACTCGCGCGAGTCTCCGCATCGCTGCGGCGAGTGTGGCGCCCGCTTCTCGTGGCGAAGCTGTCTCTCGAGACATTTGCGACGCGTACATaaacataaaacatcataa
- Protein Sequence
- MEVQKSMLCTGCLAMDRRMILIDGEYKKRCFLQIIKELQLSVPDLPLWLCWECEANIKRFTKFKLQVQRSYQILHELIKADYQFVPKLSIHEVSNISITEDTDAQTTVKTEEIPIKYETDFSDDDTLLDIKETLPEKPVKIENHKQKVKSKVKLKKKIYNEVELTEKEINEERKNMALREDYINAMFRCEKCLVSFPNEDDMKDHISKKHELHALKYKCSICERSFSTEVAFSYHRSRHYRRYECVVCSYSCTSKLAVRNHCAATHIHSVGVKKLLKNYGLEENDVNGSKSEQRYPCEHCPKVFGWKTSLRKHAETHKIEAGIKRKPYCEPCRLSFTTTANLQKHVKTSSKHQIQLKLRKLKETNPDESSAKQIADIKSSVNSTRELFPCPQCDKKFQWRGNLIRHMDSHAARAKGELVCLPCNRTFSSIATYKQHMKISKKHATENDFKYMCSDCGKKFASKTKLKDHVDWEHLKNFVHTCQDCQKVFKTHTSLYLHGQVVHKKASAQHLCENCGKSFPNQTKLRSHTQALHSRESPHRCGECGARFSWRSCLSRHLRRVHKHKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528589;
- 90% Identity
- -
- 80% Identity
- -