Xspa015933.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- Sall1
- Assembly
- GCA_947086425.1
- Location
- OX352208.1:211884-213590[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0042 0.24 12.1 1.2 2 23 164 185 163 185 0.97 2 13 1.1e-05 0.00065 20.2 7.8 1 23 191 213 191 213 0.98 3 13 0.16 8.9 7.2 1.0 5 23 246 264 243 264 0.89 4 13 6.6e-06 0.00037 21.0 0.7 1 23 270 293 270 293 0.96 5 13 8.2e-06 0.00047 20.7 2.9 1 23 301 323 301 323 0.98 6 13 0.00019 0.011 16.4 1.3 1 23 329 351 329 351 0.99 7 13 0.00012 0.0071 17.0 1.4 1 23 357 379 357 379 0.98 8 13 0.00062 0.035 14.8 3.8 1 23 385 407 385 407 0.97 9 13 3.3e-05 0.0019 18.8 0.4 1 23 413 436 413 436 0.95 10 13 0.084 4.8 8.0 0.2 3 12 443 452 442 454 0.92 11 13 0.00055 0.031 14.9 1.6 1 21 466 486 466 489 0.91 12 13 0.23 13 6.7 0.2 1 23 495 520 495 520 0.86 13 13 0.029 1.6 9.5 3.1 1 23 526 549 526 549 0.97
Sequence Information
- Coding Sequence
- ATGGAGTCCAAAATATGTCGTGTTTGCCTCGACAGAACAGCCACGATATCGCTGTTTGAGCTTCACGAAAACATGCAGTACCGCGAGAAGTTGATGAAATGCGTAACCGTGGTTATCGAAGAAGGCGACGGCCTCCCTGACGCTATCTGCGAGAGCTGCGCCTCGGAGCTCGCTCTCAGCTACGAGTTCGCGCAGAAATGCATCGCGTCAGACCGCGCGCTGCGCTGCCTCGGCCTGCTGCAGCCCCCAGACCTCAAGGAAGAAAAACCAGATATCAAGCTCGAACCCAAAGAAATGATCCCAGAATATACGGAACAAGTCTTCGAAGACGATGACTACGCTGACGATCAGGACGCCAGATCCGAAGCAGAGGATGCTCCTCCATCAATAGGAAACGTCAATAGGGAAGATACAAAGAGAACAAGAAAATATAAATGCCTGCCAGATCATTTACGTAAGAACAAGCATAGAGTGTACTCTGGTCCGATACAATGCATGATGTGCGGCCGAGTGCTGAAGTGTCAGTCGGCGTACGAGCTGCACATGCGCACGCACACCAAGGAGAAACCTTACACCTGCGATCTCTGCCACAAATGTTTTAGTAACAAATCCACTATGAAACGTCACATCAGCAGACATTACGGAATCAACGAAGTTGAGCAGAGGAAACTTAGGTCCTTACCAGACTCGGATGGAAGGAAGAAGAAAAAAAAATCTCCACCTATATTTTGTATTATATGCGGATTAAAAGTAAACTGCCGCTCAGCTTTAGAATCCCATATGAGAACTCACACGGGGGATAAGCCATTTTCCTGCAAAGAATGTAACAAGTCTTATTCACTGAAAGGTTCCCTAATGAGGCACATAGAAGTGAATCACAAAAAGTATAAGTCAGCACAATTCATCTGCGAACATTGCGGGAAAAACTTCCACACAAAATCTAACATTATCATACATTTACGCATCCACACTGGAGAGAGACCGTACACATGCCCGTTCTGTAATGACAAGTTTGTTCAGATATCATCATTAATTCGGCACAAGCGGCGTCACACCGGAGAGAAGCCTTTCACTTGCCAGACATGCTCCAAGGCGTTCCTTGATAAGTCTCTTCTACAAAAGCATCAATCCGTCCACAGCAATGCTCGAGACTTCATATGCCACATCTGCAGCAAGGGGCTGAAGACCAAACAAGCCTTGAAGACCCACATCAACCACCACAACAACCCAGAGAAATTCATCTGCAATTTCTGTGGAACGGCATTCACTGTGAAAGGAAACCTCCTTAAACATGTTACAAGGATGCATTCGGAGAAGTCAGGAATATGTACAATATGTCACAAGTCATTTTCGAACATACCAGTCCACATGAGGTTTCACAATGGAGAGAAGCCGTATGTCTGCAAGCTTTGTAACCAAGGGTTTGCCACGCAGCGGAGTTTGTCTCACCACATCGGCTTTAAGCATAGAGATGCTGCTAAGTTCAAATGCACTACAGGGCAATGCGACAAGGCTTTCCCACTGATTTCCATGCTGGAGTTCCATGTGCTAAAAGCTCATTTGGACACGACGCCGTATATTTGCCAACACTGCGCCCGCGGCTTTTTACGGCCGTGCGATCTTTCGCGCCATCTTAAAATGAATCATATGGAGACTACGCATTTAAAATCGCAGTTCATTAAAACTATACAGATAGATAATGCTTAG
- Protein Sequence
- MESKICRVCLDRTATISLFELHENMQYREKLMKCVTVVIEEGDGLPDAICESCASELALSYEFAQKCIASDRALRCLGLLQPPDLKEEKPDIKLEPKEMIPEYTEQVFEDDDYADDQDARSEAEDAPPSIGNVNREDTKRTRKYKCLPDHLRKNKHRVYSGPIQCMMCGRVLKCQSAYELHMRTHTKEKPYTCDLCHKCFSNKSTMKRHISRHYGINEVEQRKLRSLPDSDGRKKKKKSPPIFCIICGLKVNCRSALESHMRTHTGDKPFSCKECNKSYSLKGSLMRHIEVNHKKYKSAQFICEHCGKNFHTKSNIIIHLRIHTGERPYTCPFCNDKFVQISSLIRHKRRHTGEKPFTCQTCSKAFLDKSLLQKHQSVHSNARDFICHICSKGLKTKQALKTHINHHNNPEKFICNFCGTAFTVKGNLLKHVTRMHSEKSGICTICHKSFSNIPVHMRFHNGEKPYVCKLCNQGFATQRSLSHHIGFKHRDAAKFKCTTGQCDKAFPLISMLEFHVLKAHLDTTPYICQHCARGFLRPCDLSRHLKMNHMETTHLKSQFIKTIQIDNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00661547;
- 90% Identity
- -
- 80% Identity
- -