Xspa001486.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352223.1:426865-438329[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.038 2.2 9.1 1.2 1 23 253 275 253 275 0.97 2 27 0.45 26 5.8 0.1 3 23 303 324 301 324 0.94 3 27 0.45 26 5.8 0.1 3 23 339 360 337 360 0.94 4 27 0.45 26 5.8 0.1 3 23 375 396 373 396 0.94 5 27 0.45 26 5.8 0.1 3 23 411 432 409 432 0.94 6 27 0.45 26 5.8 0.1 3 23 447 468 445 468 0.94 7 27 0.45 26 5.8 0.1 3 23 483 504 481 504 0.94 8 27 0.45 26 5.8 0.1 3 23 519 540 517 540 0.94 9 27 0.45 26 5.8 0.1 3 23 555 576 553 576 0.94 10 27 0.45 26 5.8 0.1 3 23 603 624 601 624 0.94 11 27 0.45 26 5.8 0.1 3 23 639 660 637 660 0.94 12 27 0.45 26 5.8 0.1 3 23 675 696 673 696 0.94 13 27 0.45 26 5.8 0.1 3 23 711 732 709 732 0.94 14 27 0.091 5.2 7.9 0.2 3 23 747 768 745 768 0.94 15 27 0.091 5.2 7.9 0.2 3 23 793 814 791 814 0.94 16 27 0.45 26 5.8 0.1 3 23 829 850 827 850 0.94 17 27 0.45 26 5.8 0.1 3 23 865 886 863 886 0.94 18 27 0.45 26 5.8 0.1 3 23 901 922 899 922 0.94 19 27 0.45 26 5.8 0.1 3 23 937 958 935 958 0.94 20 27 0.037 2.1 9.2 0.2 1 23 979 1001 979 1001 0.97 21 27 0.0012 0.07 13.8 0.8 1 23 1005 1028 1005 1028 0.97 22 27 0.49 28 5.6 2.8 1 19 1033 1051 1033 1056 0.89 23 27 0.54 31 5.5 1.9 1 23 1062 1085 1062 1085 0.89 24 27 6.6e-06 0.00038 21.0 1.6 1 23 1092 1115 1092 1115 0.98 25 27 0.0061 0.35 11.7 4.1 2 23 1122 1143 1122 1143 0.96 26 27 2.6e-06 0.00015 22.3 1.1 1 23 1149 1171 1149 1171 0.98 27 27 3.8e-05 0.0022 18.6 2.1 1 23 1177 1199 1177 1200 0.96
Sequence Information
- Coding Sequence
- ATGGAACATGATTCAGACGAAAAGTATAGCTATGGAGAGTGCCGATGTTGCCTGGCAAAAGGCAGACATATGGATTTGCTACAGGAATACTATCACAACGGAGTGCGAGAAGTTTATCGAGATATCTTCATGGAAACACTAAACCTATCTCTATCTACAGCAAAGAGCCTGACCACCCTGATGTGCACACGATGCATCTCACGGTTGCGAGATGCGCACGCATTCCGCGCTCTCACCATCCGCACCGAGAGACACCTTCTAGATGTTATCAAGAAGAATATGGAGTTTGTTGACGTGTCAGTTGGAGAAGAATCAGCCGAGATGGATGTTAAATGGGAAATCAAAGTTAAACAAGAAATCTCGGATGACTTAGTGCCGGAACACGCTTATGATTCTGATAATATATCATCCCATGACTATGTTGAGTCTCCCCTGCCCCTGGTGTGGGGTGAGTCTGCACTGCTGGCACGCTTCAGCGCTGCGCCCGCGCCGCCGCGGCTGCCGACCCGCGCCCAGCTGGCGCGTGCTCTGCCCAACTTCGTGAGACACCTGGAGATGCTCAAACAGGTGCGCGTGAGTGCCCGCAGTATCAGTGCGTCCCTGTCCCGCGCGCGGGGGCCGGGGGGGGCTGAGGGGGCGGGGCCGGGGGGGGCGTGGCCGGGGGTGGGGGGGGAGAAGGCTGCGCACGCGCACAACGCTACCACACTTATACGGTactcgaacatgactccgttccgaagtaagaacaacggcggcttcccttgtttctactgTCGCAGCACATTCGACAGCTTCCCGGCGTTGAAGGAACACACCAGACAACACCAGCATACGGAACTAGCCAGAGTGTTCAAATACTTCGGTTCAGAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGGTATATATATATATATATATACACTTCGGTTCAGAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACACGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGGTATATATATATATACACTTCGGTTCAGAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACACGCCGACCATCGCCGAGCTAACTGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGAGTCTGATAGTGTACGCTGATATAGCGGGCCTCGCTTGCACCTTGTGTGGTCAACACGCGCCGACCATCGCCGAGCTAACAGACCATCTCGCCAGGCGACACGACAAGACGCTGGTCCGCTCGGTGGGTCAGCGTGTGATTCCGTTCCTCGTCGGGGATCACTTCGTGTGCCCGCTCTGTTCCAGTCGATAcgagaccttcggatctatagagagacatatgaacggacactttagaaactacgtttgtaagATCTGCGGCAGCGGCTACGCCACCCCCTACCGATTAAAAGTCCACCACAAAAGCATGCACGTCTCAGGCACCTTCCCGTGCACTCTCTGCCACAAAATATTTCCAACCGCACAGAAACGCACCAACCATTGCAACGCAGTGCACAATCAAAAGAAACGCTTCAAATGCAACCAGTGCAGTGAAAGATTCGCCGAATACTTCCGCAGgcagaaacatatggtcgaaactcacggatctaaaccgctccgatacgaatgtaatgtctgcgagcgatctttcgatagaagatacactctatccagacatctgaagagagaccatcttgaggaaagagagaatgtctgccacgtctgtgattaccgatgttttactaagaacgagctaaaagtgcatatggttaagcatactggagagagaatcttcgaatgtgcggtctgtaaaaagtcgtacgcgagaaaaaaaacgctaaaagaacatatgaggattcataataatgataggaggtttgtctgtcccgcgtgtggacaggcttttgtacagaaatgtagcctcaaaggacatatgaagacgcatcaCTTTGAGTATAGCTTACCGTGA
- Protein Sequence
- MEHDSDEKYSYGECRCCLAKGRHMDLLQEYYHNGVREVYRDIFMETLNLSLSTAKSLTTLMCTRCISRLRDAHAFRALTIRTERHLLDVIKKNMEFVDVSVGEESAEMDVKWEIKVKQEISDDLVPEHAYDSDNISSHDYVESPLPLVWGESALLARFSAAPAPPRLPTRAQLARALPNFVRHLEMLKQVRVSARSISASLSRARGPGGAEGAGPGGAWPGVGGEKAAHAHNATTLIRYSNMTPFRSKNNGGFPCFYCRSTFDSFPALKEHTRQHQHTELARVFKYFGSESLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKVYIYIYIHFGSESLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHTPTIAELTDHLARRHDKVYIYIHFGSESLIVYADIAGLACTLCGQHTPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKSLIVYADIAGLACTLCGQHAPTIAELTDHLARRHDKTLVRSVGQRVIPFLVGDHFVCPLCSSRYETFGSIERHMNGHFRNYVCKICGSGYATPYRLKVHHKSMHVSGTFPCTLCHKIFPTAQKRTNHCNAVHNQKKRFKCNQCSERFAEYFRRQKHMVETHGSKPLRYECNVCERSFDRRYTLSRHLKRDHLEERENVCHVCDYRCFTKNELKVHMVKHTGERIFECAVCKKSYARKKTLKEHMRIHNNDRRFVCPACGQAFVQKCSLKGHMKTHHFEYSLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -