Basic Information

Insect: Xanthorhoe spadicearia
Gene Symbol: -
Assembly: GCA_947086425.1
Location: OX352200.1:6201469-6206613[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00039 0.022 15.4 1.4 1 23 343 365 343 365 0.98

2 8 5.1e-07 2.9e-05 24.5 1.5 1 23 371 393 371 393 0.98

3 8 6.8e-06 0.00039 20.9 0.6 2 23 402 423 402 423 0.98

4 8 7.5e-06 0.00043 20.8 0.7 1 23 429 451 429 451 0.99

5 8 8e-08 4.6e-06 27.0 2.1 1 23 457 479 457 479 0.98

6 8 4.8e-07 2.7e-05 24.6 1.3 1 23 485 507 485 507 0.97

7 8 1.2e-05 0.00066 20.2 6.3 1 23 513 535 513 535 0.97

8 8 1.6e-05 0.00093 19.7 0.6 1 21 541 561 541 562 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00039	0.022	15.4	1.4	1	23	343	365	343	365	0.98
2	8	5.1e-07	2.9e-05	24.5	1.5	1	23	371	393	371	393	0.98
3	8	6.8e-06	0.00039	20.9	0.6	2	23	402	423	402	423	0.98
4	8	7.5e-06	0.00043	20.8	0.7	1	23	429	451	429	451	0.99
5	8	8e-08	4.6e-06	27.0	2.1	1	23	457	479	457	479	0.98
6	8	4.8e-07	2.7e-05	24.6	1.3	1	23	485	507	485	507	0.97
7	8	1.2e-05	0.00066	20.2	6.3	1	23	513	535	513	535	0.97
8	8	1.6e-05	0.00093	19.7	0.6	1	21	541	561	541	562	0.95

Sequence Information

Coding Sequence: ATGTGTGAATGGCTCGCCCGTGGAGAATGGTGCGATGTTCAGCTATTGTGCGGAGGTCGCACTTTCAGCGCACATCGCGCGGTCTTAGCAAGCGTCAGCACTTTTCTTCGCGGTCTGCTGCTATCCAGTTCTGATGAAACGACAACGTTCATCGTGCTACCGGATTTTGATATAGAAGCGATGGCCTCTGTACTATATTATATTTATAATGGAGAAGTAATCCTACTAAGGAATAAGTTATCACTTTTTTTGGATATAATTCAAGCTTTGCAAATATTTGTAGACTGCCAATATTTATCCAAAATACAGGAGGACATCGAGTACAAATATTATAAATTAGAAAAACACAGTGCTACGATTTCACTACACAGTGAGATATTTACTTTGAGTTTTAACAACGATAAAGATCAGCACATTTTTAATATTAAAAAATGTAAAGAGCCTGACGGAGCACTTTTGAAATATTCACGAAGCGACTCAGATTTTGACGATAACGTCGTACGATGCCAGAATGAGAGTGAGCTCAGCGAGTCTCGTTTAGGAAATCTGAAATCGCCATACGAAGGCCGACAAAGGAACTCTTTACTACGTGATTTATATATCGAGACATATCCTCCAAACGGTAATGTTAACGGTCTGAAGGAAAGCGTGCTAGCAATATCAAATGAATGCTATCAGTCTCCGGCATCTGTGCTCTTAGCGAATGCAAATTGCAGACATCTTAGCGTTGACGTCGCGGTCGCGGGACAGTCTCGCACAACAAGTGCCCACTCTTCACATTCGACCGTCACTGAAGGTAGACTGCAGTATGTTTTAGACTCTACAAAGGAATGCAATGAAGTCACAAAGCTTGCAACAGATTCACATCAACTTAAAAATTCAGAAGAATGTAAAGTTGCAGAGAATGATACAAATAATAATATTCAAAAATCAACATTACTCCCAGAAGAAAATGCATTTAAAACGGTAATTGACAAAGAACAAGCACATGTTGATAGTTCCATGGTTGTTGAAAACAGAGAGAGTTTCAAGTGTGCTCATTGTGATCAGGTGTTTACAAGTGGCGAGTCACTGTCGATCCATACCACTCGGCACTCGACGACCGCGCGGTACACTTGCGGGGAGTGCGGCAAGACATTCTCTCAGCTGAGGAACTTCAAGTATCACATGTCGATACATCGCGGCACTCGCGAGTTCGCAGCAACTTGCACCGTCTGCGGGAAGTATTTCAATGATAGAGGGTACTTGAGCAGCCATATGAAGATTCATAGGAACCGAAAAGAATATAAATGCACTTTGTGCCCCAAATCGTTTAATCAACGAGTTGCGTATAATATGCATGTACGGATTCATACAGgcgtgaagccacacgtgtgtgaggagtgcggcaaagcgttctcccgcaagatgctcctgaagcagcatcagcgcacgcactcgggcgagcggccctacgcctgcccgcactgcgataagcgcttcgcggacagatctaatatgacgctgcatctcaggctacatactgGAGTAAAGCCGTTCTCTTGTCCCATGTGCCCGAAGTCATTCACCAAGAAGCACCATCTAAAGTCCCACCTGAACTTCCATACCGGTTCTAAGCCCTACTCGTGCCCTCGCTGTGGACTTGCCTTTACTCAGTCATCTAATATGCGAACACATTATAAAAAATGCACAGTTTCTGAGCCTAGCACAAGTCATACAACTCTGGTATTACCTTTTTCAAGGGATCTACCACAAAACAATGATAACAAAGGAATCTACTATGTTGTAGACAATGAGGATGAAGAGAAGATGATTGCTCTGAGGTTGTAG
Protein Sequence: MCEWLARGEWCDVQLLCGGRTFSAHRAVLASVSTFLRGLLLSSSDETTTFIVLPDFDIEAMASVLYYIYNGEVILLRNKLSLFLDIIQALQIFVDCQYLSKIQEDIEYKYYKLEKHSATISLHSEIFTLSFNNDKDQHIFNIKKCKEPDGALLKYSRSDSDFDDNVVRCQNESELSESRLGNLKSPYEGRQRNSLLRDLYIETYPPNGNVNGLKESVLAISNECYQSPASVLLANANCRHLSVDVAVAGQSRTTSAHSSHSTVTEGRLQYVLDSTKECNEVTKLATDSHQLKNSEECKVAENDTNNNIQKSTLLPEENAFKTVIDKEQAHVDSSMVVENRESFKCAHCDQVFTSGESLSIHTTRHSTTARYTCGECGKTFSQLRNFKYHMSIHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCTLCPKSFNQRVAYNMHVRIHTGVKPHVCEECGKAFSRKMLLKQHQRTHSGERPYACPHCDKRFADRSNMTLHLRLHTGVKPFSCPMCPKSFTKKHHLKSHLNFHTGSKPYSCPRCGLAFTQSSNMRTHYKKCTVSEPSTSHTTLVLPFSRDLPQNNDNKGIYYVVDNEDEEKMIALRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01529350;
90% Identity: iTF_01529350;
80% Identity: iTF_01529350;