Basic Information

Insect: Xanthorhoe spadicearia
Gene Symbol: -
Assembly: GCA_947086425.1
Location: OX352201.1:6619343-6624895[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.02 1.1 10.0 4.3 1 23 156 179 156 179 0.97

2 12 0.00057 0.032 14.9 0.6 1 23 186 208 186 208 0.96

3 12 0.00012 0.0069 17.0 1.0 2 23 214 235 213 235 0.93

4 12 1.7e-05 0.00097 19.7 0.3 1 23 241 263 241 263 0.98

5 12 9.2e-07 5.3e-05 23.7 1.7 1 23 272 294 272 294 0.95

6 12 0.00024 0.014 16.1 0.7 1 23 300 322 300 322 0.98

7 12 0.00092 0.052 14.2 6.8 1 23 328 350 328 350 0.98

8 12 6.3e-09 3.6e-07 30.5 0.8 1 23 356 378 356 378 0.99

9 12 0.00027 0.015 15.9 1.8 1 23 384 406 384 406 0.99

10 12 2.9e-05 0.0017 18.9 1.3 1 23 412 433 412 433 0.97

11 12 0.0033 0.19 12.5 0.8 1 23 439 461 439 461 0.92

12 12 0.0015 0.086 13.5 0.3 1 21 467 487 467 488 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.02	1.1	10.0	4.3	1	23	156	179	156	179	0.97
2	12	0.00057	0.032	14.9	0.6	1	23	186	208	186	208	0.96
3	12	0.00012	0.0069	17.0	1.0	2	23	214	235	213	235	0.93
4	12	1.7e-05	0.00097	19.7	0.3	1	23	241	263	241	263	0.98
5	12	9.2e-07	5.3e-05	23.7	1.7	1	23	272	294	272	294	0.95
6	12	0.00024	0.014	16.1	0.7	1	23	300	322	300	322	0.98
7	12	0.00092	0.052	14.2	6.8	1	23	328	350	328	350	0.98
8	12	6.3e-09	3.6e-07	30.5	0.8	1	23	356	378	356	378	0.99
9	12	0.00027	0.015	15.9	1.8	1	23	384	406	384	406	0.99
10	12	2.9e-05	0.0017	18.9	1.3	1	23	412	433	412	433	0.97
11	12	0.0033	0.19	12.5	0.8	1	23	439	461	439	461	0.92
12	12	0.0015	0.086	13.5	0.3	1	21	467	487	467	488	0.95

Sequence Information

Coding Sequence: ATGGAAACCAAGGATGAAATTATCCATGAAGATGATAAAGATGAGCATGTAGAATTTGAAATACCTCTTACACTGCTCCAATATTTAGGCTCAGAAGAATGTAATCTACAACAAATATGTCGAATATGTCTGTCTAGTAACAATGAAGTGATGTACCCCTTGTCTTCTGGGAAAGAATACAGTGTTTTGACTGAAATGTTTGAAGCTGTAGCTTCTATTCAAGTGAATTCAGAAGATGATCTCCCAAACGGATTATGTTCAAACTGCCAAACTGAAGTAGTTCAATACTTCAAGTTTAAAACTAGATGTGAAAGATCTGATTACACACTGAAATCTATATTGAAAGGGGAATTTTCTATCAAAGAAGAGCCAAAACCAGATTATATGAAAATCACCATCTTTGATAGAGATCCTGATTCTACAGTAACAGAGATGATAGTTTCTAGAAGTAAAAAGCAGAAGAAATATGTTTGCTCTTTATGTTCAAAGGTGTTCCATCAATTAAAACAGCTCAAATTTCACCTGAAAAAAAACCACGAAACCACAGATGATCCGTTCTCGTGTAAAAATTGCAAAGAAACATTCGTTTCTGAAAACGATCTGAAACTGCACAGCATTGTACACGAGGAGGGCCCATGGAAATGTATCAACTGCGATAAAGTTTTTAAAGAGAAAACAGCGCTGCGCCGGCACCTTCAACGTCACATGGATTCGAAGCGGTTTTCTTGCGATGCTTGTGGGAAGGCGTTCGTTGAGAAATATGCTCTGAAACGTCACTCACGGGTACACACCGGAGAACAAGTGGAGAAGAAACATGCTTGTCCTGATTGTGGGAAAAGATTCATAGATAGTACACAACTTACGGCGCATATGACGCATCACAGCGGCGCGAAGCCGTTCCAATGTGTAGTCTGCGGCAAGGCCTTCCATTCAACGCGCCTCTTGGCTTCCCACCGACTTGTGCACTCGGATCTCAAGCCGTATGCGTGTGAATATTGCGAAAAGCGGTTTCGTCACGAGTCAACGCGTAATACTCATCACAGAACGCACACGGGCGAGAAACCATACGTCTGCTCCATTTGCGGCAAAACGTTTATACAGAGTTCCAATATGAGGCTGCATATGCGAACTCACACAGGCGAGAAACCTTACTCGTGTTCGCGTTGTGACAGCAAATTCTCATCTGGTTCATCCCTGAAGAGTCATGAGCGAACTCACACTGGAGAACGCCCTTACAAATGTAAAGTTTGTGGCAAGAGCTTCGCCCGTCTGAATCTAAAGCTGCACATGCGTCTACATTCTGGTGAGAGACCGTTCGCTTGCAGCGCTTGCCCCAAGAAGTTCGTCAGCGCCTCACTGCTGAGGGAGCATTGCCGCGCTCATACTGGTGAGAAACCATTTGAATGCGCAAAATGTGAATCGAAATTCTCTTCAAAAGCCCTGCTCATAAAACACTTGAAAAACATCGAAAATAGTAAATCTAAAAGTAGACACTCCAAAGATACGACACAAACGCCTGTTCCAAAGACTAATCCTAAGGACGAAAGTGAAGTAATTACGGCACCGATGCAACAAATAGAGAGTGAAATACCCAACGCAATCATGGAACTAACCCTCGGCACTCACGAGACGTTCAATGTCAGCCAAGAGTTAGTCTTCCAGGATAGTAATGTCAAAACACATGTGATTGTGCTAGGAAGCAGCAATACAGTCAGCTTTGTTAGTAATAACGGAGATGAAACAAATGGTTTGAACATAGTTACTGTCAATGAAATTGGAGTAAGCACATCTACTGAGAATGCTGGTAGTTGA
Protein Sequence: METKDEIIHEDDKDEHVEFEIPLTLLQYLGSEECNLQQICRICLSSNNEVMYPLSSGKEYSVLTEMFEAVASIQVNSEDDLPNGLCSNCQTEVVQYFKFKTRCERSDYTLKSILKGEFSIKEEPKPDYMKITIFDRDPDSTVTEMIVSRSKKQKKYVCSLCSKVFHQLKQLKFHLKKNHETTDDPFSCKNCKETFVSENDLKLHSIVHEEGPWKCINCDKVFKEKTALRRHLQRHMDSKRFSCDACGKAFVEKYALKRHSRVHTGEQVEKKHACPDCGKRFIDSTQLTAHMTHHSGAKPFQCVVCGKAFHSTRLLASHRLVHSDLKPYACEYCEKRFRHESTRNTHHRTHTGEKPYVCSICGKTFIQSSNMRLHMRTHTGEKPYSCSRCDSKFSSGSSLKSHERTHTGERPYKCKVCGKSFARLNLKLHMRLHSGERPFACSACPKKFVSASLLREHCRAHTGEKPFECAKCESKFSSKALLIKHLKNIENSKSKSRHSKDTTQTPVPKTNPKDESEVITAPMQQIESEIPNAIMELTLGTHETFNVSQELVFQDSNVKTHVIVLGSSNTVSFVSNNGDETNGLNIVTVNEIGVSTSTENAGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00267435;
90% Identity: -
80% Identity: -