Xspa008638.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthorhoe spadicearia
Gene Symbol
ham
Assembly
GCA_947086425.1
Location
OX352209.1:5777580-5815254[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.15 8.4 7.3 0.2 2 23 283 305 283 305 0.93
2 9 0.00045 0.025 15.2 1.0 1 23 312 335 312 335 0.93
3 9 2.2e-08 1.3e-06 28.8 0.1 1 23 341 364 341 364 0.96
4 9 6.6e-06 0.00038 21.0 1.1 1 23 370 392 370 392 0.95
5 9 6.7e-05 0.0038 17.8 6.1 1 23 398 420 398 420 0.99
6 9 0.00014 0.0077 16.8 0.4 2 21 428 447 427 448 0.94
7 9 1.6e-08 9.1e-07 29.2 0.7 1 23 840 862 840 862 0.98
8 9 5.8e-07 3.3e-05 24.3 1.7 1 23 868 891 868 891 0.97
9 9 6.3e-06 0.00036 21.0 3.3 1 23 897 919 897 919 0.98

Sequence Information

Coding Sequence
ATGCTGAATGATACGGAAATGAAAATGAAGATGTCTGCAGCGGACAGTCAGGAGTCTGTCAGTCCACCGCCGAGTCCCACCGACTCTGCCACCTCAGAGTCTACGCCCACCCTAGTTCACATAAAACAGGAGACAATGCCTCCTGGAACAGACGTCAAGGAATACTATGGAGCGATAGACTTCAATCTATCCGACACATACCTTTCATCGAACTTCCCAGACGGACGATATCTACCCAGACCGCTCGACTGGCATCAAGGATTCGAGCTTAAAAGTCCAAAAGAAAAAGATGAATCGAAAGATGATGAAACGGGAGAGATAGACCTAAATTTGCCAATCGAGCTGGTACATAAAAATAATGGGGTTTTTGCGCGAGTGAATATAGCTAATGGGACGAAGTATGGACCTTTTGCTGGAAAGTGGGAGACTCAGCCTTTGGACAGAAGATACGCTTGGGAGGTACTCGGCAAGAATGGTGTCCGCGGCTGGCTTGATGGCACCAACGAGAAGACCAACTGGTTGAAGTTAGTGCGCTCTACCAACTACCCCCATGATGTAAACGTGCAGCATCTGTTGTTGGCTGGCCAAGTTTGGTACAAGGTGATCCGGGAGATTACACCTGGACAAGAACTGCTTCTAGGACCCCGGACACCCTTACCGCTACAAGATGTCATGCCTATGCCGATACCAAACAGTCACCTTCTTACACCTGCAAAATTCAGCAGCCAGTCGCTTGAGAAATACAGCGGCGAGTCTTGCGAGAAGTTCAACTTACAGTCCTTGGAGAAGTACGGACCTCTCGCTGAGGAGAGGAACGAAGAGGACGACCGCGAGGAGACGGAGCCAAGGTGCACGTTTTGTGAAGAACCATTCCCTAATATCGAGGCTCTTGACCACCACCTGATCCAGTCCCACGCGCAGCCAGCGTCCGCCTTCCACTGCGAGCTCTGCAACCGCTCGTACAGCTCCCGAGCGCTGCTGCTGCGGCACCGCGCGTTAGCACATAGCAACATCAGGAAATACCCCTGCGAAAATTGTCCTAAGGTATTTACCGATCCTTCCAACCTGCAGCGCCACATTCGCGCGCAGCACAAGGGAGCTCGCAGCCACGCCTGCCCTGAATGCGGGAAGACCTTCGGAACTGCCTCCGGTCTAAAGCAGCACACTCACATCCACTCCAGCATCAAGCCGTTCCAGTGCAAAGTTTGCTTTAAGGCATACACCCAGTTTTCTAACTTGTGCCGCCACAAACGTATGCACGTCGCCTGCCGAGCCCTCGTCGAATGCGGCAAATGCGGCCAGTCCTTTACTTCCTACGCCTCTCTTACTAAGCATAAGAGATTCTGCGACACAGCAACTGCCAGCTCCGTAGGTCTCCGAGGACAAATGCCCCAAGGACTTCCACAGATCCCGTCCCTGTCGAGCGTCGGGATGGCTAACCCAAACAGCCCCAACCCTTTCCCAATGTATCGCCCGGGATTGTCACTCTCATACAACACTTTTGCTCACTACCCAGCTTTGTTTTCCGCTGCGGCTGCAGCTTGCCCCCCAGAATTCCTGAACCCTTTGCTTTTCAATGTTCAGGGTGCAAGGCTCGCTATGGAACACGACATTGCCATGTCAAATGCAAACCTAGCTAAGCAACAAGAAGGACGAATGTCTGTTAAGAGTATTGACAGCTCAACTTCTATTGAAGATATCAGAAAGTCAAAAGACTTGGAGTTTGAATCTAACAGGAGTGATAACACCGACAAGGCAACATCAAATAAGTCATTGAACTTGTACCCTAAACATTCTCCACCGTCGGCCGAGGATACTTCTTCTCAACAACGACCATCACCGATCCTGCCGATGCACACACCGATGGTACCATTAAACTTTGCTAGAGATGACCACAAGAGGAAGTCACCATTCAGCTTTTTCCTTAAACATAACAACAACGAAATGCACGAAAGGAAATCTGTATCACCTACATTACCAAAAGATTTGTCGAAGAATACGGTAGAAGATGATAAAACTTCAGAATATTCAGATGTAGAGGAATCCAAGAAAGATCAAAGTGATCAGCCATTGGATCTGTCGGTTTCTCGAAAGCAAAGCGACAAGGATTCCGAAGCAGAAGTTGACGATCGTTCCTTTCGTCACTCTGTCAAGTCGTACTCTCCTCCAGAGAGTCCCGTGGAGAGAAGCAAAACTCCAGAAAATGACACTACCGATGTCGACGTAGAAGGTGTAGAACCAAAACGAGAAGACTCCCCACCTCAACTGGTATCGTCTCCACTAGCATTCCCTCTGCCCGTCCATCCACAGCACAACCTCATGGATGCGATGTACCGTCCCAGATTTCCGTCATTCCACTCCGCGGAGTCCATTCTTAACTCATCCCATTCACCATATGTCCCGAGCCCCTTTAATTTTTTATCCCCACTTCTCAGCACTGACGGGCCCGACAGGCAACCGAGTGCGTACGCTAAGTTTCGTGAATTAAGCACTGGTGCTGGGAAAGTACGCGATCGTTAcgcgtgcaaattttgcggaaaggtgttccctcgcagcgcgaacctgacacgacatcttcgcactcataccggcgaacagccttacaaatgcaagtactgtgagcggtcgttctcaatctcatcaaatctgcagcggcacgtgaggaacattcacaataaggaaaggccgtttcggtgtcccttgtgcgatcgatgctttgggcagcagacgaacCTTGACCGGCATCTGAAGAAGCACGAAGCGGAGGGTGGTGACTCGCCTAGTTCTGCGGATACGGAGCGTGAGGACGCTTATTTCGATGACATCAGGTCGTTTATGGGGAAAGTAACGTGTTCTCCTCCTGCGTCGTCCCCGCACGCGCCCTCCCCGCACCCCTCGCACCCCGCGCACCGGCCATCGCTGGCTATCTCCACATAG
Protein Sequence
MLNDTEMKMKMSAADSQESVSPPPSPTDSATSESTPTLVHIKQETMPPGTDVKEYYGAIDFNLSDTYLSSNFPDGRYLPRPLDWHQGFELKSPKEKDESKDDETGEIDLNLPIELVHKNNGVFARVNIANGTKYGPFAGKWETQPLDRRYAWEVLGKNGVRGWLDGTNEKTNWLKLVRSTNYPHDVNVQHLLLAGQVWYKVIREITPGQELLLGPRTPLPLQDVMPMPIPNSHLLTPAKFSSQSLEKYSGESCEKFNLQSLEKYGPLAEERNEEDDREETEPRCTFCEEPFPNIEALDHHLIQSHAQPASAFHCELCNRSYSSRALLLRHRALAHSNIRKYPCENCPKVFTDPSNLQRHIRAQHKGARSHACPECGKTFGTASGLKQHTHIHSSIKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTATASSVGLRGQMPQGLPQIPSLSSVGMANPNSPNPFPMYRPGLSLSYNTFAHYPALFSAAAAACPPEFLNPLLFNVQGARLAMEHDIAMSNANLAKQQEGRMSVKSIDSSTSIEDIRKSKDLEFESNRSDNTDKATSNKSLNLYPKHSPPSAEDTSSQQRPSPILPMHTPMVPLNFARDDHKRKSPFSFFLKHNNNEMHERKSVSPTLPKDLSKNTVEDDKTSEYSDVEESKKDQSDQPLDLSVSRKQSDKDSEAEVDDRSFRHSVKSYSPPESPVERSKTPENDTTDVDVEGVEPKREDSPPQLVSSPLAFPLPVHPQHNLMDAMYRPRFPSFHSAESILNSSHSPYVPSPFNFLSPLLSTDGPDRQPSAYAKFRELSTGAGKVRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPPASSPHAPSPHPSHPAHRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00377331;
90% Identity
iTF_01336140;
80% Identity
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