Xspa003098.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352222.1:601188-603371[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.7e-05 0.0021 18.6 5.8 1 23 169 192 169 192 0.98 2 11 2.3e-05 0.0013 19.3 0.9 1 23 195 218 195 218 0.97 3 11 0.00023 0.013 16.1 1.6 1 23 224 246 224 246 0.97 4 11 0.00021 0.012 16.2 2.8 1 23 253 275 253 275 0.98 5 11 1.2e-05 0.00066 20.2 1.2 1 23 282 303 282 303 0.98 6 11 0.0001 0.0059 17.2 1.6 3 23 311 331 310 331 0.97 7 11 1.3e-06 7.7e-05 23.1 1.8 1 23 337 359 337 359 0.98 8 11 0.00012 0.0068 17.0 0.3 1 23 365 388 365 388 0.94 9 11 0.00016 0.0089 16.6 0.3 1 23 394 416 394 416 0.97 10 11 0.00022 0.012 16.2 1.2 1 23 422 445 422 445 0.96 11 11 6.8e-07 3.9e-05 24.1 0.5 1 23 451 474 451 474 0.97
Sequence Information
- Coding Sequence
- ATGTTTCCTCCTGTTTGCAGAGTGTGTCTGACTAGCCAAGCTAAAATGGATCCTATGGAGACAACAGAACTCATAGAAATATATGAAAAGTTCACTAATAATAAACTCCACACAGAAGACGGAAGACCAACAACAGTATGCTATATCTGCCGCTCTCAGTTACTAAAGTGGCATCGTTTCTACAAAATGTCTCAAAAAGCTGAAAAGCTGCTAACTGATCTTGTAAACAATGATTGGCAGGTTTCAGAAAAGACTGCTGTTGTGCTCTATCAAGGACTGATCCCTAATCTTTCTATCTCCAACACAAGCTTGGTATCTTTGGGTAATCCAAAAGTGGCATCATTGGAAGAATGCTTGTTAATAACTCCAAAAGAAGAGTTTGATACATTTGAGTATGATGATGATGATATTGAAAAAGTTGATGCAGAATATACTGATACTATTGCTAATATCATGCATAAAGATAGCAAACCGTCAGAAATCCTTGAAAATAAAGAGAAATGCTACGTGTGTCACACATGCAGCCAAACGTTTACTAAGAAATCCCATGTACAAAAACATATTAAGAGTGTCCACATGCAGTATTCTTGCAAAAGATGTCCTAGTACCTTTACTACTAGCTCCACACTTAAGGAACATATCGCTAAAATACACCCGAAAGAACCATATTATACCTGTATTGAATGTTATGCCATATTCTCTACTAAACATGACTTAAACATACATATGAAAACACATACAAACCTCAAACAACGATTTGAGTGCAATTTTTGTAGTAAACAATTTGTCTCTAAGCAAGGGCTCATTACACATATAAAACATCATACATATACAAAGCCCAGATACATATGTGATACTTGTGGCCGAACTTTCATGAAGAGTAATCTCCGACAGCACTTATTAACACACAACGCTGTTAAAACTAAAATATGCAACATCTGCAGTAAAGCGTTCCTAACCAGCACACATCTTAAAGTCCACATGAAAATCCACACCGGTATTAAACCATTCTCGTGCAGTCAGTGCACAAAATCATTCATATCAAATCGAAGCTTAAAAGTCCACATGTTAACTCACACTGGGGAAAAGCCATATGTCTGTGTACTTTGCAACCGTGCATTTGCTCAGAAATACACTCTACAGCAACACAACATCCGTATTCACTCCGGAGTTAAGCCGCATGTCTGTGACAGCTGTCAGAGAGCCTTCCCCACAGTGAATGCATTAAGAATACATATTCGCTCTCACACCGGGGAAAAACCTTTTGTGTGTAAGGAGTGTAATCGTGCTTACACAACCACTACAGGCTTAAAATCACATTTTCAAAGGGTGCATAGTGGCTTGAAGCCGTTTGCTTGTACTGTCTGTGATGTTACGTTCGCCAACAAATCTGAGCTTACGAGGCATGTTAGAAAATATCATAAAACTAAACCGTGTCTACAATCTGTGTGA
- Protein Sequence
- MFPPVCRVCLTSQAKMDPMETTELIEIYEKFTNNKLHTEDGRPTTVCYICRSQLLKWHRFYKMSQKAEKLLTDLVNNDWQVSEKTAVVLYQGLIPNLSISNTSLVSLGNPKVASLEECLLITPKEEFDTFEYDDDDIEKVDAEYTDTIANIMHKDSKPSEILENKEKCYVCHTCSQTFTKKSHVQKHIKSVHMQYSCKRCPSTFTTSSTLKEHIAKIHPKEPYYTCIECYAIFSTKHDLNIHMKTHTNLKQRFECNFCSKQFVSKQGLITHIKHHTYTKPRYICDTCGRTFMKSNLRQHLLTHNAVKTKICNICSKAFLTSTHLKVHMKIHTGIKPFSCSQCTKSFISNRSLKVHMLTHTGEKPYVCVLCNRAFAQKYTLQQHNIRIHSGVKPHVCDSCQRAFPTVNALRIHIRSHTGEKPFVCKECNRAYTTTTGLKSHFQRVHSGLKPFACTVCDVTFANKSELTRHVRKYHKTKPCLQSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01529405;
- 90% Identity
- -
- 80% Identity
- -