Xspa002514.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352203.1:9360757-9363010[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00098 0.056 14.1 4.3 1 23 176 198 176 198 0.97 2 14 1.7e-05 0.00099 19.6 3.9 1 21 204 224 204 225 0.94 3 14 0.00012 0.0071 17.0 1.0 1 23 243 265 243 265 0.93 4 14 0.00012 0.0067 17.0 0.1 1 21 271 291 271 292 0.95 5 14 0.00018 0.01 16.5 1.4 1 23 303 325 303 325 0.95 6 14 8.5e-06 0.00049 20.6 3.8 1 21 331 351 331 352 0.95 7 14 0.011 0.64 10.8 3.4 2 23 361 383 360 383 0.94 8 14 0.011 0.62 10.9 5.3 1 23 389 411 389 411 0.97 9 14 4.2e-06 0.00024 21.6 0.9 1 23 417 439 417 439 0.96 10 14 0.00037 0.021 15.5 1.1 1 23 445 467 445 467 0.96 11 14 4.9e-06 0.00028 21.4 0.6 1 23 473 496 473 496 0.97 12 14 0.00035 0.02 15.6 0.0 1 23 502 524 502 524 0.97 13 14 9.1e-06 0.00052 20.5 1.1 1 23 530 552 530 552 0.98 14 14 0.028 1.6 9.6 0.5 1 21 558 578 558 579 0.90
Sequence Information
- Coding Sequence
- ATGTCTTCCTCGGAGCTTGTTTGCCGAGTATGTCTTGGCAATGTAACCATCATCAGGCACAGTATTGACGATAAACATCTCCAACAGTTGTATGAAAAACTCACAAACACTAAGCTCAGCCCGGATAGCAGATTCCCTAAAACAATATGCTGCATTTGTCATTCACATTTAAAGAGATTGGAAAAGTTCTCAGACATGGCTCGGAGATCTGAAAACATTCTTGTAGATCTCTTTATCAGTGGCGTTGAAAAGATAACATCTAACATCTGTGCTCCATTGAATATAGAAACATCAACTCTATCAATAGCAGCTACACAGACCATTTCTATCGGTGAAGAATTCTTAACCGAATGTGCTGTTAACTCATCTCCGCCCAATACATCCAACAGACAAGTTAACTTAATTTATAGTCCAGTAGCTGTTAAGGTAGAAGCAAATATCAAACATGAGGATGTCAAGTCTGAAAAAACTGACAGTGAAGGCAGTGATGAGTATGATGGATCATCTGTTGATGGAAATACCAAATTCTGTTGTGAAACATGTAGCAAAGCTTTTACCACAATACATCTGCTCAAATCTCACCTAATAAGCCATTCAGGAGCAAAGCCACACATTTGTAACAAGTGTAACAAATCCTTCTCCAGAAAACACAATATGGTTCAGCACATGAAATCTTGTAATAGTAAAGAGCAGGTCAAAAGTGAAGTGGAACAACATACATTATATTTTTACTGTGAAATCTGCAGTAAAAAGTTTAATTCAAAAGCACTTTTGAAGTCGCATAATGTAATTCATAGTGAAGAAAAACCGTACAGTTGCGATGGTTGCAGTAAAGCATTTGCTAGGAAGCAGGGCATGAAACAGCATATGCTAATTTGCAGTGAAGTTAAACCACGCGTACCCTCATTTCTCTGTCCATACTGCAATGAGACTTTCAAATGTGAAAGTGATTTAAATGCTCACATCACAACTCATCCAAAGGATAAGCCATACTCTTGTAAGAAATGTCACAAATCATATACAACGAAACAGAATTTGAAACAGCATTTGAAGATATGTTTTATTGAAAATGAACTGGTCACTTGCTCGCTTTGTCCTCAAACATTCTCATGCAGAAGCGATCTATGCAAGCATTTGAATGCGGATCACGCTTCTCAAAAGCCTTTCTGTTGCGACCGCTGCAGCGCTAAATTCTGGTACAAAAGTCACTTAAAGGTACATATGAGAATACACACTGGAGAAAGGCCCTTTGCTTGTGAGATTTGCGGCAAAACGTTTACGCTTCGAAACCATTTGAAAGCGCACCTCGGCAGTCATTCAGGACTGAAGCCTCACGCTTGCGAGTTATGCGGGAAAGCGTTCCTCGCGCGTTTTAACTTGAGAGAACATATGCGGCGGCATACAGGCGAGCGGCCCTATCCCTGCAGCGCCTGCGGGAAACGCTTCGGGTATCAAAGCACGCTACGACAACATTTGCGCAGAGTTCACGCGCAGGCGAAACCGTTCGCTTGCGACAAATGTCCCTTATCCTTCGCTTTACAAAGCGGATTAGCATCACACGCGCGCGTACACACTGCTGCCCGAAATTATGCTTGTAATATATGTGATAAAACCTTCTTTGAAGCACGGCACCTGAAAGGGCATATGCAGGTTCACTCCGCGGCGCGACCTCACGCGTGCGCTGCTTGTGGAAATGCGTACAAACGCCGTGAACATCTAAAGCTGCATGTCAAGTCTAAGTGCAAGGCTGGCTTTGCTTTGTCCACATCATGCTTGCCTTTGAGATGA
- Protein Sequence
- MSSSELVCRVCLGNVTIIRHSIDDKHLQQLYEKLTNTKLSPDSRFPKTICCICHSHLKRLEKFSDMARRSENILVDLFISGVEKITSNICAPLNIETSTLSIAATQTISIGEEFLTECAVNSSPPNTSNRQVNLIYSPVAVKVEANIKHEDVKSEKTDSEGSDEYDGSSVDGNTKFCCETCSKAFTTIHLLKSHLISHSGAKPHICNKCNKSFSRKHNMVQHMKSCNSKEQVKSEVEQHTLYFYCEICSKKFNSKALLKSHNVIHSEEKPYSCDGCSKAFARKQGMKQHMLICSEVKPRVPSFLCPYCNETFKCESDLNAHITTHPKDKPYSCKKCHKSYTTKQNLKQHLKICFIENELVTCSLCPQTFSCRSDLCKHLNADHASQKPFCCDRCSAKFWYKSHLKVHMRIHTGERPFACEICGKTFTLRNHLKAHLGSHSGLKPHACELCGKAFLARFNLREHMRRHTGERPYPCSACGKRFGYQSTLRQHLRRVHAQAKPFACDKCPLSFALQSGLASHARVHTAARNYACNICDKTFFEARHLKGHMQVHSAARPHACAACGNAYKRREHLKLHVKSKCKAGFALSTSCLPLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528521;
- 90% Identity
- -
- 80% Identity
- -