Xspa003099.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352222.1:607224-609722[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7e-05 0.004 17.7 5.2 1 23 169 192 169 192 0.98 2 13 2.6e-05 0.0015 19.1 0.9 1 23 195 218 195 218 0.97 3 13 0.00069 0.039 14.6 0.4 1 23 224 246 224 246 0.96 4 13 0.00012 0.0067 17.0 5.2 1 23 253 275 253 275 0.98 5 13 0.47 27 5.7 0.2 3 23 282 303 281 303 0.83 6 13 5.2e-05 0.003 18.1 1.2 1 23 309 331 309 331 0.96 7 13 4.3e-06 0.00025 21.6 0.1 1 23 338 360 338 360 0.98 8 13 0.00012 0.0067 17.0 1.6 3 23 368 388 367 388 0.97 9 13 7.6e-07 4.4e-05 23.9 1.0 1 23 394 416 394 416 0.98 10 13 0.0028 0.16 12.7 0.2 1 23 422 445 422 445 0.91 11 13 3.7e-05 0.0021 18.6 0.9 1 23 451 473 451 473 0.97 12 13 0.00025 0.014 16.0 1.2 1 23 479 502 479 502 0.96 13 13 6.9e-06 0.00039 20.9 0.4 1 23 508 531 508 531 0.96
Sequence Information
- Coding Sequence
- ATGTTTCCTCCTGTTTGCCGAGTGTGTCTGACTAGCCAAGCTAAAATGGATCCTATGGAGACAACAGAACTCATAGAAATATATGAAAAGTTCACTAATAATAAACTCCACACAGAAGACGGAAGACCAACAACAGTATGCTATATCTGCCGCTCTCAGTTACTAAAATGGCATCGTTTCTACGAAATGTCTCAAAAAGCTGAAAAGCTGCTAACTGATCTTGTAAACAATGATTGGCAGGCATCGGAAAAGACTGCTGTTATGCTCTATCAAGGACTGATCCCTCATCTCTCAATCTCCAACACAAGATTGGTATCTTTCTGCGGTCTAGAATCTGTATCGTTGAAAGAATGCTTGTTACAAACTCCAAAAGAAGAGTTTGATACATTTGAGCATGATGATGATGATATTGAAAAAGTTGATGCAGAATATACTGATACTATCGCTAATATCATGCATAAAGATAGCAAACCGTCAGAAATCCTTGAAAATAAAGAGGAAAGCTATGTGTGTCACACATGCAGCCAAACGTTTACTAAGAAATCCCATATAGAAAAACATATTAAGAGTGTCCACATGCAGTATTCTTGCAAAAGATGTCCTAGTACCTTTACTACTAGCTCCACACTTAAGGAACATATCGCTAAAATCCACCCGAAAGAACCATATTATACCTGTATTCAATGTTATGCCATATTCTCTACTAAACCTGACTTAAACATACATATGAAAACACATACAGACCTTATACAACGATATGAGTGCAATTTTTGTAGTAAAAAATTTGTGTCTAAGAAATGGCTCAAAAAACATGTAAAACATCACACAGATACAAAGCCCCGATGCATTGAGTGCAACCAAAGTTTTCCCAATGAGAGAGCTTTAAAAGGACATAATGTAAGACTTCATAGTGGATTAAAACCTTACGTATGCATTCAATGTGACAGAAGATTCTCTTATAGACCGTACTTAACAAGGCATATGCAGATGCACAAGAAAAAAGCAAAGTCTTATATATGTGATGCTTGTGGCCGAGCCTTCTCACAGAGTAAAGGACTCCGACAGCACATATTAACACACAACGCTGTTAAATCTAAAATATGCAACATTTGCAGTAAAGCATTTCTAACCAGCACCCATCTTAAAGTCCACATGAAAATCCACACTGGTATTAAGCCATTCTCGTGCAGTCAGTGCACAAAATCATTCATATCAAATGGAAGCTTAAAAGTCCACATGTTAACTCACACTGGGGAAAAGCCATATGTCTGTGTACCTTGCAACCGTGCATTTGCTCAGAAATTTAATCTTCAGCAACACAACATCCGTATTCACTCCGGAGTTAAGCCGCATGTCTGTGACAGCTGTCAGAGAGCCTTCCCCACAATGAGTACATTAAGAATACATATTCGCTCTCACACCGGGGAAAGACCTTTTGTGTGTAAGGAGTGTAATCGTGCTTACACAACCACTACGGGCTTAAAATCACATTTTCAGAGGGTGCACAGTGGCTTGAAGCCGTTTGCTTGTGCTGTATGTGATGTTACATTCACCAACAAATCAGGGCTTAAGAGCCATGTTAGAAAATATCATGAAACTAAACCGTGTCTACAATCTGTGTAA
- Protein Sequence
- MFPPVCRVCLTSQAKMDPMETTELIEIYEKFTNNKLHTEDGRPTTVCYICRSQLLKWHRFYEMSQKAEKLLTDLVNNDWQASEKTAVMLYQGLIPHLSISNTRLVSFCGLESVSLKECLLQTPKEEFDTFEHDDDDIEKVDAEYTDTIANIMHKDSKPSEILENKEESYVCHTCSQTFTKKSHIEKHIKSVHMQYSCKRCPSTFTTSSTLKEHIAKIHPKEPYYTCIQCYAIFSTKPDLNIHMKTHTDLIQRYECNFCSKKFVSKKWLKKHVKHHTDTKPRCIECNQSFPNERALKGHNVRLHSGLKPYVCIQCDRRFSYRPYLTRHMQMHKKKAKSYICDACGRAFSQSKGLRQHILTHNAVKSKICNICSKAFLTSTHLKVHMKIHTGIKPFSCSQCTKSFISNGSLKVHMLTHTGEKPYVCVPCNRAFAQKFNLQQHNIRIHSGVKPHVCDSCQRAFPTMSTLRIHIRSHTGERPFVCKECNRAYTTTTGLKSHFQRVHSGLKPFACAVCDVTFTNKSGLKSHVRKYHETKPCLQSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -