Xspa018053.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352211.1:362439-367748[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.2 1.8e+02 3.1 3.3 2 23 175 196 174 196 0.94 2 18 0.0025 0.14 12.9 6.8 1 23 240 262 240 262 0.98 3 18 2.9e-06 0.00017 22.1 1.1 2 23 333 354 333 354 0.97 4 18 4.5e-05 0.0026 18.3 0.2 5 23 364 383 362 383 0.96 5 18 0.016 0.92 10.3 0.2 1 23 389 411 389 411 0.95 6 18 0.00055 0.031 14.9 1.0 1 23 417 439 417 439 0.98 7 18 0.0014 0.078 13.7 0.3 1 17 444 460 444 461 0.94 8 18 0.0025 0.14 12.9 0.6 1 23 562 584 562 584 0.98 9 18 0.007 0.4 11.4 0.3 1 23 590 613 590 613 0.92 10 18 0.0002 0.012 16.3 1.2 3 23 621 641 620 641 0.97 11 18 1.5e-05 0.00084 19.9 0.9 1 23 647 669 647 669 0.98 12 18 0.0039 0.22 12.3 0.1 1 23 675 697 675 697 0.96 13 18 2.2 1.3e+02 3.6 0.2 6 20 707 721 706 724 0.95 14 18 4.7e-05 0.0027 18.3 0.0 3 23 750 771 750 771 0.95 15 18 2.9e-05 0.0017 18.9 0.6 1 23 777 799 777 799 0.96 16 18 0.012 0.67 10.7 0.2 3 23 809 829 808 829 0.97 17 18 0.019 1.1 10.1 0.0 6 23 838 855 837 855 0.96 18 18 0.034 1.9 9.3 0.3 6 23 865 882 862 882 0.96
Sequence Information
- Coding Sequence
- ATGAATAACGACAGAAAACAAATGATTTCCGAGGAACCAGCTTCCGATCACTCGAAAGCTGCAAAAGAGATGCAGCAGAAGTTCTTGGTTGAAAATGGCACGGAGATTCTCCTACCAGAGCATGTCACCATGACTCCGGAAATCCTGAAAAACAATATTTGCCGAATATGTGCAACATACCACGAATCGGGGCCAAAGCTGGTGCCTCTTTACCTGTACGATGAAGGCTCCCGTCCCTTAGCTCTGATAATCAATGCATTCCTGCCTATTCAGGTATCAGAGTCGGACGGTCTGCCGAGGGTCGCGTGTCGCTCGTGCTGCAGCAAGCTGCACGCGTGGCGCGCCATGTGGGACAGTTGCGCGGAGACACAGAGGGTGCTGGCCTCGCAGGCCGAGCTCTTGAACGGAGAAGCTGGGAATGCTCAGCCACTAATGGAACGAAATGCTGTTAAATCGCTACTCACCAGAATGGTACAAAATGTTCTCGCTTCGTACTTAGTCAATATCAGCTCGATGGAGCTCGTCTGTCAGGTATGCCACTGGAAGACCTCCAGGGAGGAGTTCCACCAGCATTTGAACTCTAATCATGAGGATCTGAAGAGTCAGGATGATATAGAAGCGTTTGTCAGAGAACACGTCACATTTGAGGAGACCCTCGATTCCGACGGAGATGGCGCGTCCCTCGGCTCGGCTGACGGTTCTGAGGTTTCGCGGCGATTTCACTGTTCCACCTGCCATACAGAATTTTCTACTCGCTCTCGACTCTCTCTTCACCTCAGAACACATAATGCAAGCGGTATGCTGTGTTGCTCGAATGAAACCGAACAGGGTCTGCAAATAGGGTCAAATAATTTAGCATGTAAAGGTTGCGATCACATCGCAGCAGACCCCGCCTCGATAGCCGGTCACATCGCTCAGGGCGCATCGACACACGAAGTGACCGGAGACCCTCACGAGCAGACGAGAGACGAGACCAACCAGAAGAGGATCCCGGCCGTGTGCCCCGAGTGCAACCGCACCTTCTCCAACAAATACAACATGCTGAACCACTTGAAGAGTCACGGGAGGCAGGCTGCGAAGTTCGAGTGCGAATGTGGAAAGAGTTACTCGACTCGCGGGAACCTGGTGGCGCACAGACGCACGGCTCACCTCGGCGAGCTCGCGCACAGGTGCCAGGAGTGTGGAGAGGGGTTCCCGACGCGCGCCGCCCGCGACATCCACGCCCGTCTGCACAGCGACGTCCGTCCTTACTCCTGCACCGTCTGCTCGCGCGCCTTCCGCGCCAAGAACTCGCTCGACAAGCACCGAGAGACGCACGCGCCGAGGCAGTTCGAGTGCGCGCTCTGCGGGAGACGGTTTCGGAGGAAGGCTCATCTGAGGTCCGCCGAGGGCTCGCCGGAGCGCGACTCGGACGCGAGCTCGGACCCCGCCCCCCCCGCGCACGGCCCCCTCGCCGCGCTGCGCCGCGCCCTCCGCCGCCTGCGCGACCACTACGCCGCGCACCACCTGCCCCCCCCGCACACCCCGCCCGCCTCCCCCTCGCCGGCCGCGACCGCGGAGGACGCGGGTGACCTCGACCGCTACGATGACCTGACGCGCGACAACATGCGCCGCGACCGCTTCGACCCGGAGACGCGGCGCGCGCTCGACGCGGCGCGCCGTCGCAGCGAGGGGCGCACGCTGTACGAGTGCGCGACGTGCGGCCGCCGGCTCGCCTCGCCGCACGCCTTCGTGCACCACGCGCGCATCCACACCGGGGAGCGGCCGCACGTGTGCCACGTGTGCGGGGGCCGCTTCCGCGCGCCGCAGGGGCTCGCGCGCCACCTCGCAGAGACGCACGAGCGTCGGCGACGCCGCGCCTGCCGCCTGTGCCGCGCCACCTTCGCCAACCGGCAGAACCTGCGCCAGCACCTGCGCACGCACACCGGCGAGCGGCCGCACCGCTGCGCCGTCTGCGGCCGCCGCTTCGCGCAGAGCGGGGCGCTGCACGCGCACGCGCGCACGCACTCGCCGCGCCGGCCGCACGCCTGCGAGCTCTGCCCGGCCGCCTTCCGCCTGCGCGCCGGCCTCGCGCGCCACGCCCGCCGCCACGCCGGCGCGCGCCCGCACACCTGCGCCTGCGGCCGCGCCTTCCACGCGAGACACGAGCTGCGCGCGCACCTGCCCGCGCACCTGCCCGCCGCGCCGCACGCCTGCGCGCTCTGCCCCGCCGCCTACAGGCTGCCGCCCGCCCCGGCCCGGCACGGCTGCGCTACGTGCGGCCGCGTCTTCGCGGACGCGAGCAACCTCGCGCGGCACGCGCGGGCGCTGCACGCGGGGCTGCGGCCGCACCCGTGCGGGGCGTGCGGGCGCGCCTTCAGCCGCGCGGAGCACCTGCGCGCGCACGCCCGGCAGCACGCGGCGCCGGCCCCGCCCGCGCTGCTGTGCGAGGCGTGCGGCGCCGCGTGCGCGTCCCCGGCGGCGCTGCGCTCGCACCGGCGCCGCCACGCCGCCGCGCGGCACGCGTGCGCGTGCGGCGCGCGCTTCCGCCGCGCGGGCCAGCTGCGCGCGCACCGCGGCGTGCACGCGCCCGCGCGCCCGCACGCCTGCTGGTGCGGGCGCGCCTTCCGTCTGCGCGCGCAGCTCAACATGCACGCGCAGCGACACCGCCGACGACACGATCGGATGCTCCACTTCGTGGACCTGATCGACACGTCGTCGTCGTCGTCGGAGGTGGACTCGGACGAGGCCCGGGGGCCCCCCGACCCCCCGGACGACCCCCCGGAGGAACTCTCGGATGACTCGCCGATGACGCCCTCCCCGGGTCTCCGGGAGCGCGGCTATTTAACTGACTAG
- Protein Sequence
- MNNDRKQMISEEPASDHSKAAKEMQQKFLVENGTEILLPEHVTMTPEILKNNICRICATYHESGPKLVPLYLYDEGSRPLALIINAFLPIQVSESDGLPRVACRSCCSKLHAWRAMWDSCAETQRVLASQAELLNGEAGNAQPLMERNAVKSLLTRMVQNVLASYLVNISSMELVCQVCHWKTSREEFHQHLNSNHEDLKSQDDIEAFVREHVTFEETLDSDGDGASLGSADGSEVSRRFHCSTCHTEFSTRSRLSLHLRTHNASGMLCCSNETEQGLQIGSNNLACKGCDHIAADPASIAGHIAQGASTHEVTGDPHEQTRDETNQKRIPAVCPECNRTFSNKYNMLNHLKSHGRQAAKFECECGKSYSTRGNLVAHRRTAHLGELAHRCQECGEGFPTRAARDIHARLHSDVRPYSCTVCSRAFRAKNSLDKHRETHAPRQFECALCGRRFRRKAHLRSAEGSPERDSDASSDPAPPAHGPLAALRRALRRLRDHYAAHHLPPPHTPPASPSPAATAEDAGDLDRYDDLTRDNMRRDRFDPETRRALDAARRRSEGRTLYECATCGRRLASPHAFVHHARIHTGERPHVCHVCGGRFRAPQGLARHLAETHERRRRRACRLCRATFANRQNLRQHLRTHTGERPHRCAVCGRRFAQSGALHAHARTHSPRRPHACELCPAAFRLRAGLARHARRHAGARPHTCACGRAFHARHELRAHLPAHLPAAPHACALCPAAYRLPPAPARHGCATCGRVFADASNLARHARALHAGLRPHPCGACGRAFSRAEHLRAHARQHAAPAPPALLCEACGAACASPAALRSHRRRHAAARHACACGARFRRAGQLRAHRGVHAPARPHACWCGRAFRLRAQLNMHAQRHRRRHDRMLHFVDLIDTSSSSSEVDSDEARGPPDPPDDPPEELSDDSPMTPSPGLRERGYLTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -