Basic Information

Insect: Xanthorhoe spadicearia
Gene Symbol: -
Assembly: GCA_947086425.1
Location: OX352222.1:484470-486143[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0014 0.077 13.7 1.5 1 23 128 150 128 150 0.96

2 13 3.6e-06 0.00021 21.8 2.4 1 23 156 178 156 178 0.98

3 13 2.6e-05 0.0015 19.1 1.9 1 23 184 206 184 206 0.98

4 13 1.5e-06 8.8e-05 23.0 0.5 1 23 212 234 212 234 0.98

5 13 0.00011 0.0062 17.1 1.0 1 23 240 262 240 262 0.91

6 13 0.0019 0.11 13.2 0.2 1 20 268 287 268 290 0.93

7 13 0.0013 0.077 13.7 0.3 3 23 298 318 296 318 0.97

8 13 1.4e-08 8e-07 29.4 0.3 1 23 324 346 324 346 0.99

9 13 6.1e-07 3.5e-05 24.2 0.4 1 23 352 374 352 374 0.98

10 13 0.00019 0.011 16.4 3.9 1 23 380 402 380 402 0.98

11 13 1.3e-06 7.7e-05 23.1 0.8 1 23 408 430 408 430 0.99

12 13 1.1e-07 6.4e-06 26.5 3.9 1 23 436 458 436 458 0.99

13 13 0.001 0.057 14.1 2.1 1 23 464 487 464 487 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0014	0.077	13.7	1.5	1	23	128	150	128	150	0.96
2	13	3.6e-06	0.00021	21.8	2.4	1	23	156	178	156	178	0.98
3	13	2.6e-05	0.0015	19.1	1.9	1	23	184	206	184	206	0.98
4	13	1.5e-06	8.8e-05	23.0	0.5	1	23	212	234	212	234	0.98
5	13	0.00011	0.0062	17.1	1.0	1	23	240	262	240	262	0.91
6	13	0.0019	0.11	13.2	0.2	1	20	268	287	268	290	0.93
7	13	0.0013	0.077	13.7	0.3	3	23	298	318	296	318	0.97
8	13	1.4e-08	8e-07	29.4	0.3	1	23	324	346	324	346	0.99
9	13	6.1e-07	3.5e-05	24.2	0.4	1	23	352	374	352	374	0.98
10	13	0.00019	0.011	16.4	3.9	1	23	380	402	380	402	0.98
11	13	1.3e-06	7.7e-05	23.1	0.8	1	23	408	430	408	430	0.99
12	13	1.1e-07	6.4e-06	26.5	3.9	1	23	436	458	436	458	0.99
13	13	0.001	0.057	14.1	2.1	1	23	464	487	464	487	0.95

Sequence Information

Coding Sequence: ATGGGAGGAGTCAAAATTAAAATTGAAAAAGATTCTGAGGAATATGAAACTCCATTAAATTCAACTCACAACGGTGTGACATCAGTTTTCATAAAACAAGAGCCATTCGATGAACCGGAGAACCATGAAACAGGACTGATTGAAATTGAGATTGTGCCCATAACTGAGAATAAGACTGATCAGTCTAAAGCATCAGTCATCAAGCAAGAACCAACTGAGGTCGAGATCAAAGTTGAAGCAATCGACAATGAATCGGAACAATCAAATGAAAACATATCCAAGGAGTTTCCATACCACGATAACATCAAAATGGAACCAGAGAAAAAGAAAATAAAAAGAATGAGGTACAAAGAAAGCAATTTACTTGACTCAGAATTGTACTTCCATTGTGACATTTGCAGTGAGAAATTTATCATGAGACGGGATTTAGTAAGACATCTAGAATATCACAACGATGAAAAACCTTACGCCTGCACTCAATGCTACAAGAAGTTTAAATTAAAAGGTGATCTCTCTAGACACATGAGAACACACACAGGAGAAAAGCCATACGCTTGTGACAGTTGCACAAAATGTTTCACAGCTGCGAGCGCTCTTAAAAGACACAAAAGAGTTCACACCGGAGAAAAGCCGTACGCCTGCACTAGCTGTTCTAAAAGCTTCAACGATCCAAGCGCATTGAAAAATCACACCCGGATACATACAAAAGAAAGGGCCTTTGCGTGCCATCGTTGTGACATGACGTTTGCAAGAAAAGATACATTAATAAACCATTTACCTACACACACCGGGGAAAAGGTTTATCCATGCTCGGCTTGCGATGCAAAATTTACCTCCCAAGCCGATCTAATGAAACACAAACCTAGCCATATCGGAGAGAAATTATACGGATGTGGGTTATGCAATATGAGTTACGCTATCCACGGCAGCTTAAAAGCTCATATGAGAGTGCACTCCGGGCTCAAACCTTACGTCTGTACCGAATGTGACAAAACATTTAGCCAGTCCGGAGCCCTTAAACAGCACATACGAATTCACACCGGTGAAAAACCTTATGCGTGCAACTTATGTGACAAGAGGTTTACAGAAGCTGTCACTTTGAAACGACATATAAGGGTGCATACAGGCGAACGACCATACACTTGTACGTGTTGCAACCAATCGTTCAACGATGCAAGCACGCTTAAGAATCATGTGCGAAGGCACACGGGGCAGAGACCTTACCAATGCAGCTTGTGTAGCACAGCTTTTATACAGAAGGGAGATTTTAACAAGCATATGCGAATACACACGGGTGAGAAACCGTACGAGTGTAGCAACTGCGAAAAGAAATTCACAAGGAAAGAACATCTTAATAACCATATGCGGATACACACGGGAGAAAAGCCGTTCGCGTGCACAAAATGTGATATGAAATTTCAACAGAGGAATTACCTAAAGTCGCATGTAAGTCGTATGCATAATGAAGATGAGAAAGAAGTATCTACTTAA
Protein Sequence: MGGVKIKIEKDSEEYETPLNSTHNGVTSVFIKQEPFDEPENHETGLIEIEIVPITENKTDQSKASVIKQEPTEVEIKVEAIDNESEQSNENISKEFPYHDNIKMEPEKKKIKRMRYKESNLLDSELYFHCDICSEKFIMRRDLVRHLEYHNDEKPYACTQCYKKFKLKGDLSRHMRTHTGEKPYACDSCTKCFTAASALKRHKRVHTGEKPYACTSCSKSFNDPSALKNHTRIHTKERAFACHRCDMTFARKDTLINHLPTHTGEKVYPCSACDAKFTSQADLMKHKPSHIGEKLYGCGLCNMSYAIHGSLKAHMRVHSGLKPYVCTECDKTFSQSGALKQHIRIHTGEKPYACNLCDKRFTEAVTLKRHIRVHTGERPYTCTCCNQSFNDASTLKNHVRRHTGQRPYQCSLCSTAFIQKGDFNKHMRIHTGEKPYECSNCEKKFTRKEHLNNHMRIHTGEKPFACTKCDMKFQQRNYLKSHVSRMHNEDEKEVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00267403;
90% Identity: -
80% Identity: -