Xspa013242.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352198.1:2252335-2253585[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-09 6.4e-06 26.0 0.6 5 42 20 56 17 59 0.88 2 2 1.1 1.1e+03 -0.4 0.1 23 39 139 155 135 161 0.75
Sequence Information
- Coding Sequence
- ATGCCACGAAACGGAAAACGTCGAAAATCGACTAAAGTATTCCACGGTGCAGAGGTAATGAGACAGGCCATCATGCTGATTTACAATGGTATGTCCATCCGAGCGGCGGCCAAACATAAAGGTATACCTTATGCCACTTTAGCCCGTTATTATAGAAAAAGCGTAAAAGCTGGAACACACGACATAAACCTAACACCAAATTACAGAGTAAATCAAATTTTTACCGACGAACAAGAAACATCACTCGCCGATCACATAATCAAATGTACCCAAATGTTCTACGGTTTGAAACGAAGAGACATTCTTAGTTTGGCTTACGAAATGGCACTGTCTAGTGATGTAAGTGTACCATCAAAATGGCACCAGTTACAACTTGCTGGCAAAGATTGGCTACACAGCTTTCAAAAGAGGCAGTCAATCAGATACAGTCTCAGCCGGGCTACGTTATTTAATAGACACAATGTTAATACGTTTTATGACAATCTTCATGAAGCCATGAGCCGAAATCCACGATTTGGTGATGGAACAAGATTGTACTATTTGGATGAGACCAGCACAATGAACTTTCAAAGCTCTGGGGAAATGGATCCTTTGAGAAACCAAGTCAGCAAATTAACCAGTGCTGAGGAAGAATGTGTGATAACAACGTGCTTCATCGTAAGTGCTGTCGGATATGCCTTACCGCCTGTCACGGTATTCCCTAGAGTACATTTCAATACCGACATGACCGATACCCCAGCTGGTACTTTGGAGTTAAGGACAACAACAGGAATAATGGACACAGTATCGTTTGCACTAACAATGCAACATTTTATTGATCAAACCCAAAGTAGTAAAGACAACCCTTCACTGTTAATTATAGATAACCACGACGCACATATCAGCTTTAAAGCCTTAAATCTCGCTGAAGAAAATGGCGTGACCATTCTTACGGTCCCACCACATTCTACAGGTAAACTTGAACCATTAGCTGTTGAGGTTTTTGGCTCATTCAAGGAAGCTTATAACAGGATGATGCAAAACCCCGGTCAAGCATTTACCATGAACGACGTGGCTGAATGTCTTAAAAAAGCACACATGATAGTCATGACACCTGCTAGAATTCGCAAAGGGTTCGCAACTACGGGTATATTCCCGTACGACCGGCATATTTTTACAGATATTGATTTCGTTGCGTCTGAAATCACAGCCAGGCCAATAAACGAAGGACCGAACCAAGAAACAATCGAAGACCGATCTTTAACACCGTAA
- Protein Sequence
- MPRNGKRRKSTKVFHGAEVMRQAIMLIYNGMSIRAAAKHKGIPYATLARYYRKSVKAGTHDINLTPNYRVNQIFTDEQETSLADHIIKCTQMFYGLKRRDILSLAYEMALSSDVSVPSKWHQLQLAGKDWLHSFQKRQSIRYSLSRATLFNRHNVNTFYDNLHEAMSRNPRFGDGTRLYYLDETSTMNFQSSGEMDPLRNQVSKLTSAEEECVITTCFIVSAVGYALPPVTVFPRVHFNTDMTDTPAGTLELRTTTGIMDTVSFALTMQHFIDQTQSSKDNPSLLIIDNHDAHISFKALNLAEENGVTILTVPPHSTGKLEPLAVEVFGSFKEAYNRMMQNPGQAFTMNDVAECLKKAHMIVMTPARIRKGFATTGIFPYDRHIFTDIDFVASEITARPINEGPNQETIEDRSLTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -