Xdes024457.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757059.1:3916510-3918548[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.019 1.3 10.2 6.9 1 23 88 110 88 110 0.98 2 13 0.0027 0.19 12.8 0.9 1 23 116 139 116 139 0.93 3 13 0.9 63 4.9 3.5 1 23 152 174 152 174 0.98 4 13 0.00052 0.036 15.1 8.5 1 23 180 202 180 202 0.98 5 13 0.14 9.6 7.5 1.3 1 23 210 233 210 233 0.97 6 13 0.91 64 4.9 1.9 2 22 242 262 242 262 0.94 7 13 1.2 83 4.5 4.3 2 23 270 291 269 291 0.97 8 13 0.052 3.6 8.8 4.7 1 23 413 435 413 436 0.96 9 13 0.15 10 7.4 0.6 1 20 443 462 443 464 0.91 10 13 2.7 1.9e+02 3.4 2.7 2 23 472 493 471 493 0.96 11 13 0.12 8.7 7.6 5.4 1 23 496 519 496 519 0.94 12 13 1.1 75 4.7 0.5 2 23 525 546 524 546 0.93 13 13 0.00018 0.012 16.6 1.4 1 23 552 575 552 575 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAAGACCAACCTCAAGACAGATCACCACAAATCAATAATCATGCAGATGATAAAAACAAGGAAGCTACAGAAGAAGGCAGTGATAACACAAACTTATTTGCTTGTGTGTGGGTCAAAGTGGAGGCGATGGATAATGAAGATGATGTCCAGATAAGTGATGAACCTACAGAATCTGTTACAACGAGATCTTCGACATTAGAAGGCCCGAAAATCAAGAGGGGGCCTTACAAGAAAAGCAGCCCTGAATCAAAGAAGTTTCAGTGTGACAAATGTGACTACAAGACGAAGCACAGGAACTGTCTTAAACTTCATGTAATGAGCCATACAAATCCAAAACCATTTGCATGCGATCAATGcgattacaaaacaaaatatcctATGTCCCTTAAACGTCATGTATATGTTAAGCATGAAGAATCAGTTACTAATAGTAAAAAGTTACCTACCTTCCGATGTAGTGCGTGTTCCTATGAAACTCACTTCAAGTGGAACTTAAGCTCTCATGAAAGGAAACATGATCTAACAAAACAACATAAATGCCCTCATTGTGACTATTCAACAGCTTACAAACACAGTCTTAAGAAGCACAGTCGAACACACAACAAACCCATAGAATCGAATTACTACTGTGATAAATGCGCTTTTACTACTAGATTTGAAGGACATATTGTCAGGCATATGGCGAAAGTTCATTTAGAGATATCAGATAAAGCAAGGCAGTGCCAACACTGTTCGTTTACAACTAAAACTGGGTGGAGATTAAACACACATATCAAACGAAGTCAACAGGACCTGACTATTAAATGTGTTCATTGTGATTATCAAACAATTTACCGATGTGCATTCAGAGAACACAAGCTCACACATACTGAAGGAAATCAGCAATGGCTGGACTCCCTCTTCTCAGCCGACAACGGACAACCTCAAGATGTTGATACAAAAGATGAACAAGCATTGGAGATTATGAAGATGTGTGAAATCCGATCTAAAATGGATAATGAAGCCGGCACAAGTGATAACGAAAGTGCAAAGATTTTCAACGAACTCAAAAGCAAGTTGGACGATGAAACTTACTATACTTTTAATGATAACAGCAGAAAGGATAGAATTCTACCAGATTTAGCACAGTTGACTCAGCATGAGAAAAACAACCATTATCTTTTAGATCAGAGCTGTGATGTGGCTTGGAATAAGATACATGTCATAGAATCGGCAAACCAAGACCGCCCATTTCAATGCACAACTTGCAACTATAGTGCTAAGTTCAAAGCATCAGTCCAAAGGCATTTTCAGCGTCACCATACAAGCCACAACCGACCTTACAGATGCATGAATTGCGACTTCTCAACAAAAACTAAAGACCAAATCGCATTGCATAATAAACGCAGTAAATCTGATGAGATTTTAACTTGCAAAATCTGTGCGTATAACTCCGTCTTTAAATGTCAGTTTACAATGCACGAAAGGGAACATTATCCATTCAAATGTGTGCATTGTGAGTATACGTGCAAGAAGAAACCTGATATGCAAAAGCATTTCACGATAGTCCATCTAGGACTAGGATTGAAATGTCGGTTTTGTGACTTCAGAGCGATGAGAAAAGAAAGTTTGCTGAGTCACGAAGTCATACATACTGGGAAGAAGCCATTTCAATGCCAGCTTTGCGAGTATTCGTCCGTTCGACGATATCTACTCGAGAATCACATGAATAGATTTCATAAAGCAGCGATGAGGGGAAAAATTAATGATGACTCTAATATAAAGTTGTTTCAATAG
- Protein Sequence
- MSEDQPQDRSPQINNHADDKNKEATEEGSDNTNLFACVWVKVEAMDNEDDVQISDEPTESVTTRSSTLEGPKIKRGPYKKSSPESKKFQCDKCDYKTKHRNCLKLHVMSHTNPKPFACDQCDYKTKYPMSLKRHVYVKHEESVTNSKKLPTFRCSACSYETHFKWNLSSHERKHDLTKQHKCPHCDYSTAYKHSLKKHSRTHNKPIESNYYCDKCAFTTRFEGHIVRHMAKVHLEISDKARQCQHCSFTTKTGWRLNTHIKRSQQDLTIKCVHCDYQTIYRCAFREHKLTHTEGNQQWLDSLFSADNGQPQDVDTKDEQALEIMKMCEIRSKMDNEAGTSDNESAKIFNELKSKLDDETYYTFNDNSRKDRILPDLAQLTQHEKNNHYLLDQSCDVAWNKIHVIESANQDRPFQCTTCNYSAKFKASVQRHFQRHHTSHNRPYRCMNCDFSTKTKDQIALHNKRSKSDEILTCKICAYNSVFKCQFTMHEREHYPFKCVHCEYTCKKKPDMQKHFTIVHLGLGLKCRFCDFRAMRKESLLSHEVIHTGKKPFQCQLCEYSSVRRYLLENHMNRFHKAAMRGKINDDSNIKLFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267736;
- 90% Identity
- -
- 80% Identity
- -