Basic Information

Insect: Xanthorhoe designata
Gene Symbol: -
Assembly: GCA_963582015.1
Location: OY757057.1:2519607-2531452[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.5 2.4e+02 3.0 0.4 1 9 213 221 213 235 0.65

2 14 3.4 2.4e+02 3.1 0.2 3 23 327 348 326 348 0.94

3 14 3.1 2.2e+02 3.2 1.2 2 20 386 404 386 406 0.93

4 14 7.3 5.1e+02 2.0 1.6 1 19 755 772 755 775 0.82

5 14 0.042 2.9 9.1 1.3 1 23 787 809 787 809 0.94

6 14 0.00025 0.018 16.1 0.2 2 23 815 836 814 836 0.97

7 14 5 3.5e+02 2.6 0.1 1 19 861 878 861 882 0.71

8 14 0.011 0.75 11.0 1.5 2 23 944 965 943 965 0.94

9 14 3.5e-05 0.0024 18.8 1.2 1 23 980 1002 980 1002 0.98

10 14 3.7e-07 2.6e-05 25.0 2.8 1 23 1008 1030 1008 1030 0.99

11 14 0.0088 0.62 11.2 2.5 2 23 1036 1057 1035 1057 0.95

12 14 0.00061 0.043 14.9 2.3 1 23 1063 1085 1063 1085 0.97

13 14 2 1.4e+02 3.8 0.1 1 11 1090 1100 1090 1108 0.85

14 14 0.0013 0.09 13.9 0.5 3 23 1122 1143 1121 1143 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.5	2.4e+02	3.0	0.4	1	9	213	221	213	235	0.65
2	14	3.4	2.4e+02	3.1	0.2	3	23	327	348	326	348	0.94
3	14	3.1	2.2e+02	3.2	1.2	2	20	386	404	386	406	0.93
4	14	7.3	5.1e+02	2.0	1.6	1	19	755	772	755	775	0.82
5	14	0.042	2.9	9.1	1.3	1	23	787	809	787	809	0.94
6	14	0.00025	0.018	16.1	0.2	2	23	815	836	814	836	0.97
7	14	5	3.5e+02	2.6	0.1	1	19	861	878	861	882	0.71
8	14	0.011	0.75	11.0	1.5	2	23	944	965	943	965	0.94
9	14	3.5e-05	0.0024	18.8	1.2	1	23	980	1002	980	1002	0.98
10	14	3.7e-07	2.6e-05	25.0	2.8	1	23	1008	1030	1008	1030	0.99
11	14	0.0088	0.62	11.2	2.5	2	23	1036	1057	1035	1057	0.95
12	14	0.00061	0.043	14.9	2.3	1	23	1063	1085	1063	1085	0.97
13	14	2	1.4e+02	3.8	0.1	1	11	1090	1100	1090	1108	0.85
14	14	0.0013	0.09	13.9	0.5	3	23	1122	1143	1121	1143	0.97

Sequence Information

Coding Sequence: ATGTCTGAGGGCAGGAAGAGAAGCCGAAAATCTAAATTAGAGGTTCGAGATACTGATTTCGAATTCGAAGTTGTGAGTGAGCAGAATGACGAAACTACACCGCTTTTGCAGAAAGTGCCAAGAACTGTACTACAACTGGAATACCCTGAGATTCCCGTGTCATATGACCATGATTACTGCCAACGAGGCTCCCAGAGCTTTGCCAAGCTAGTACCAAGCAACCCCGTCTTCCGACCGAAGAAGCGACCACACAACTCCAATGTAAAGTCAGAGTTGGAGAAAATCCATGACAGCAGAGGAAGCCTAATCAAAGAAAAACGACCTGTATTACTGAAAAACATGGCATCCActtctaagaaaaaaaaaacttatataactaaaagTTACCGAGACACAAACTCAATAAAACTATGCAAATATGACCCACAGTCTCTGCTTAGTGAATCGAGAGAAATGGCAGGTAGCTCCCCTTATCCTGCTGATAAGATGCTGGATATTCTGATGAGGAATATGTGGGGGAAAGTGCTTTACACTCCCCATGTAGTTGATAGCCATGAAACTTTGCTACAACTGACGTTTGAGCTATGGCAGGCATGGTATAATTCTGGCAGGTTTATCCGAGGCTGCCCTCTCTTCTACCAGTGTCACATTTGCAATTTAGCGTGGTGGAGACTGCAGCCGTTCAGAGATCACATCAAAATCCATGATATGAAAAATCTGAAAGTGACGCTCAAAGAAAATATCCATGAGTGCATGATTATAGCCAGTGAAGATCCTGTAAGGAAGCTCATATTTATAGACATTGAGGAGGATTGCTGGAAATGTGGACAGGACTTGGAATTTCATAGGAAATCTTCTGAAGCGTACACATGTACTCGTTGTAAGAAAACGCAGTACACATGCTTGGCCTGGCGCAATCATGTatcaaaatgtatgtatgatgAAATAGCTGACTATGCCGTAGCAAGAGAGAAACTATGCCGTGTCTGTGAACAGTTTATTGATTCGCAAGACCTTGTTGAGAAACATATGACTTTGACACATTCTGTGAGGTCTGATGTACTCGTGCCAGTGGCAGTTAAGCAGTGTTCCAACTGTGATGCTAAATACTTCACTTTTAACATGCATAACTGCTTTAGAAGCTCGAAGAACAATTCTTGTGAGCACTGCTGTAGGAAGTTCGCTACGAAACCATTAGCAACAGCACATATGGTGTCTCCGTACAATGATTATACCTCATGCAGGATTTGTGGGCAGGCTTTGCCGAAGAACTGTGGAGAAATGGAGCATATTTTGAAGAAACATCCAAATCATTATTGCTTAGCGTTCAAATGCACGCTGTGCTCGGATCAGTGCAAGTTATTTGCTACTGAGGAGTCTATTGCAATGCACAGAAACAATTGGCATCAGAAAAAGGCGGATAAACGAAGATCTTTTTATGAGCTGATGCTGATTACGAAAAATAGCTTGGAAAAAGATGCTGTTGAGGAGCCTTTCCGATTCGatGAAACAGAGACCAAATCAATTCAAGTTTTGTCAGCCGACATCGATATTATAGTTGACGAAGTTGACATCAAAAAAGAGCCAATATACGACGAAAACGGTGAAATAGACTATGAAGAAATGCTTAAAAGTATGTTCAGTGATTCAACTCGTCAAGATACAGAAGATAATGAAGAAAATGTTATGAAAGATGACGAAAATGTTATGAAAGACGCAGAAAATGTTATAGAAGAAGAAAATGTTATGAAAGATGAAGAAAATGACGTTAATAATCTAATCGCGTTCAATGATAATGAAACCAGTGATAGTAATGAAGTAAATGATGAGTTTCAAATCGGTAATGTGAATGTCAAAACAGAGCCGACTGACGACATTGATATATTTGAACATCCAATAGAAATTGTAAAAGTGAAATCTGAACCTATTGATTACGAACATTCATGTCAAGATGAGATGGAAACAGAAAATGAGAGAGATGAGATTCAAAGCGAGGGTCATAATCAAAATGAGAATGAGAATATTGATACGTTAACTGTGAAAGTGGAACCAGATATAAATATAGACGACATATCATCTGGAAATATCCGTATCAAATGCGAATCTATTGTCAAAAGTGATGACGAATCATCCGATATCCCATTCGATCAGTTGCTTAACAACTTGAACAACGAAATGGACTGGGTCACAGAGGAAATCAACCCGGACGAAATAACAGTAGATGTTTTGAACCCAAGCGGGCTGTATAAGAAGAAAAAGCTGTACGCTTGCTCCAAATGTGGGTACACAGCGCATTATAAACATTATACATTACATGTTACATCGGGTTGTACTGTGTCACCAGGAATAAATGCAAGTTATTCGTGCTCAAAGTGTGGACTTACATTCGTTATGTTCAGGAATTATGTGCTACATTTCGATAGTCATGGCTATGATGTGATGTCTTGCCCTAAATGTGGAGAAAGTTTTGATCAGCTGGTCAAGTTGTTATCACATGTGCAGAGGCATGTTAAGAACAGTTTTGTGTTGATACATGTACTTAATAAGGGCGGGGAGGAGTCGCATAAGTCTAATAAggaatttaaATGTCAAGAGTGTCGTGAAGTGGTGCCTAATGCAGATGTATTTCGCCATTGGGAAGCGCATTTGACTCTGAAGACAGCAGAAAATGCAGAGTTAAAAAAAGATACTACCGAATGCCAAGTTAAAGAAGAGTTACCAGAGTTGACAGTGGACTGCGAACGTGTCACCATGAACACTAAACAGCTGGAATCCGCCACTCTTAAGCTGGCTCTGGAGCAACTCCAGTCCACGACGTCTGTGGAGAAGCAATGCGCGGTGTGCTACCGAGCATTCTCGCGCCGTTGCGACGTGAAGCGGCATATAGTGGAGCATCTCTTGATGGACGCACACGTCTTGAAGGCGCATCACAATGGTTTCCGCTGTCAGATTTGCGGGGAAGGTTTCTCACGACAGGAAAACTACAAGTTCCATATGAGAGAGCACGGATCCATGCCCATCTTCAAATGCGAACTATGCGACAAGACCTTCAGCGACTCATCAAACTTTGCGAAACACAAGAAGACACACGGCGTGCGCGTAATGGAGTGTGACCTCTGCCGGAAGAAGTTCCATTCAAAGCTCTCCCTTCAGAAGCATCTTATTGAGCACAGTAAAGATTCGAAGTTTGAATGCGTTCACTGCCCGGCGACGTTTAGCACCAAGCCTGCGTACAAGCGGCACAGATATCGGCACATCACGCACAAGTTCAAATGTGTGCTGTGCGATATCAGCTTCACTGCTCTGCAACAGAAGTGGGACCACGACTGGGAGGTGCACAAAGAGAGGAAGCTTCAGGCTGACTGTCCTATCTGCTTCAAGTCGTTTCGGAAGCTGCAAGATGTAAGAAACCACGCGCGCAGCGAACACCGCGCCTCGCTCAAACTACGGATACGCCATTTTAAAAAAACCACGTGA
Protein Sequence: MSEGRKRSRKSKLEVRDTDFEFEVVSEQNDETTPLLQKVPRTVLQLEYPEIPVSYDHDYCQRGSQSFAKLVPSNPVFRPKKRPHNSNVKSELEKIHDSRGSLIKEKRPVLLKNMASTSKKKKTYITKSYRDTNSIKLCKYDPQSLLSESREMAGSSPYPADKMLDILMRNMWGKVLYTPHVVDSHETLLQLTFELWQAWYNSGRFIRGCPLFYQCHICNLAWWRLQPFRDHIKIHDMKNLKVTLKENIHECMIIASEDPVRKLIFIDIEEDCWKCGQDLEFHRKSSEAYTCTRCKKTQYTCLAWRNHVSKCMYDEIADYAVAREKLCRVCEQFIDSQDLVEKHMTLTHSVRSDVLVPVAVKQCSNCDAKYFTFNMHNCFRSSKNNSCEHCCRKFATKPLATAHMVSPYNDYTSCRICGQALPKNCGEMEHILKKHPNHYCLAFKCTLCSDQCKLFATEESIAMHRNNWHQKKADKRRSFYELMLITKNSLEKDAVEEPFRFDETETKSIQVLSADIDIIVDEVDIKKEPIYDENGEIDYEEMLKSMFSDSTRQDTEDNEENVMKDDENVMKDAENVIEEENVMKDEENDVNNLIAFNDNETSDSNEVNDEFQIGNVNVKTEPTDDIDIFEHPIEIVKVKSEPIDYEHSCQDEMETENERDEIQSEGHNQNENENIDTLTVKVEPDINIDDISSGNIRIKCESIVKSDDESSDIPFDQLLNNLNNEMDWVTEEINPDEITVDVLNPSGLYKKKKLYACSKCGYTAHYKHYTLHVTSGCTVSPGINASYSCSKCGLTFVMFRNYVLHFDSHGYDVMSCPKCGESFDQLVKLLSHVQRHVKNSFVLIHVLNKGGEESHKSNKEFKCQECREVVPNADVFRHWEAHLTLKTAENAELKKDTTECQVKEELPELTVDCERVTMNTKQLESATLKLALEQLQSTTSVEKQCAVCYRAFSRRCDVKRHIVEHLLMDAHVLKAHHNGFRCQICGEGFSRQENYKFHMREHGSMPIFKCELCDKTFSDSSNFAKHKKTHGVRVMECDLCRKKFHSKLSLQKHLIEHSKDSKFECVHCPATFSTKPAYKRHRYRHITHKFKCVLCDISFTALQQKWDHDWEVHKERKLQADCPICFKSFRKLQDVRNHARSEHRASLKLRIRHFKKTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -