Xdes022642.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757055.1:4951278-4953146[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00045 0.032 15.3 1.3 2 23 142 163 141 163 0.98 2 11 0.00031 0.022 15.8 2.9 1 23 239 262 239 262 0.95 3 11 0.00065 0.046 14.8 1.1 1 23 266 288 266 288 0.98 4 11 0.00033 0.023 15.7 1.5 2 23 310 332 309 332 0.93 5 11 2.3 1.6e+02 3.6 0.4 1 23 336 360 336 360 0.84 6 11 0.016 1.2 10.4 0.3 2 23 383 405 382 405 0.90 7 11 3.9e-06 0.00028 21.8 2.1 1 23 415 437 415 438 0.96 8 11 0.025 1.8 9.8 1.6 3 23 455 475 453 475 0.94 9 11 0.0023 0.16 13.1 0.4 1 23 481 503 481 503 0.96 10 11 1.1 76 4.6 2.3 1 21 509 529 509 533 0.89 11 11 0.00044 0.031 15.3 0.0 3 23 585 605 583 605 0.97
Sequence Information
- Coding Sequence
- ATGTCTAAGCAAGCTATGTCACCTTTTAATCCTGCTTTTGTATTACAATATTTGTTGTTTTTGCAGGGGTCCTGTAAAGACTTTCCCATCAAGGAAGAATCAGAAATGACTGTCACTGAAACTCATCTAATATCAAAGAAACTGATAAACACAACATCCACGGTCACAAGCATAGTCAACGGCGTTATAGAATCCAACACAACCAATACATTGGTCATGGAAATACACCCTGTATCAAATGACGGGTACAAGATCAGCAATCCAGAGGAAATATTACCTACATCGGAAAATAATTACAACAAAGTAGATTTTGGAGAAAGTTTTCTACTAAACTCTATAACTGGCAATGTCTTGTCGTTAGAACAAGAAGCATATGGCCTTTTAAAGTCGAAAAAGAAAGTACCTATTGAAGGTTTTACTCAAAAGTGCCCGAAATGTGCAAAGTGGTTCCGGACGAAATATGACGTTAAGAAACATCTAAGAGTACATGAAAGTATAGAGAAAAGAGCGATGGGGATTATCAAAGGAATTAAGACTAAACGAGAGAACTACATGAAAAGAAAACAGAAAGCAGAAGAGGATGAATCAAATGGAAGAGTGGTGAAAGTTGAAAATGGAGATGGCTACAAGTGTACGTGTGGGCAAATTTTCCAACGGAGAAGTAGGATGGAAACCTGTCTCAGGTCGCACACTGAGTATGCTGACACCTGTCAGTATGTCTGTCCGACCTGCCAGAAGAAATTCAAGACGAAAGACTCCTTAATCTTCCATCGAAACAAGTTCCATAGAAAGAAATTCCCCTGCAAATTCTGCCCGACCGACTACCAAACACAAAAAGAACTTTTCAAACACTTGCAAGTTCACCAGAAAGTCCAGCTCACAGAATACAAAGTAATTGCTGAGGTAGCTAAAGGTAAACAGGAACTGAATTGCCTGATATGCTCAAAGTCTTGCAAAACGTTATCAGATCTCAAATCTCATATAATGGACGACCATGAAAATCCTTACAATTGCCCGTATTGTAGCCAAAATGAATTTAAGGAAATAATGGATTTTGTTGATCACATGAAGAAAGTTCATCCTGATGTAGGCAGCCAATCAGTTTTAGATGTGGTAGAAGCTTTTTCTAAGCTAATGAAAGCGTGGAAATGTGAAGAATGCGGACAACAGTTCCATGAAGCAGACAAGCTAGCGTTACACCAAGTTGAAAAACACGTGCCAGAAATGAAGAACGAACAGCATTTCCAATGTGAAGACTGTCAAAGAGTCTTCATAACTAACCAAGGCCTTAACTCACATAGACGGATGCATCATAGAGTTGAGCCACCCGAGCCGACAGAGCCAGAAGAAATAGGTGTTATGTGTTTAGCGTGCAGGAAGATGTGCAAAGACATGACCGCTCTGACGTCACACATGCGTCTACACTCCATGGACAGGAAGTTCCCTTGTAAATACTGTGATTTTCGGTTCGCAACTCCGCAGAAGCGTAAAGCGCATGCCGAAATACACACAGGCGATATGAAGTATGTCTGTTTTATCTGCGAATATCAGTGCAGTTCAGAAAATAGGTTTAAAGCTCATAAAGCTTCAGTAAAACACTTGAATATGAAAGAGTATCTTCTGACGGGAAAACCTCTCATCGAAGAACAATCTACGTCTAAGAAAGAGAAGATAAAAGATACATTGAGGAAGAAAGAGTGGAATGTtaaaaagagaaagagagaTAGGAAAGAGAAAGAGAGTCCGATCGCATGTGATATTTGTGGGGAGACTTTTAACGGGGAGAGTGCAATGCAAGAGCACAAACAAACTCATCCTTTTATTGAATTTCCCAACGACGATAAACCTAGTAGGATATTTTTTAAGTGA
- Protein Sequence
- MSKQAMSPFNPAFVLQYLLFLQGSCKDFPIKEESEMTVTETHLISKKLINTTSTVTSIVNGVIESNTTNTLVMEIHPVSNDGYKISNPEEILPTSENNYNKVDFGESFLLNSITGNVLSLEQEAYGLLKSKKKVPIEGFTQKCPKCAKWFRTKYDVKKHLRVHESIEKRAMGIIKGIKTKRENYMKRKQKAEEDESNGRVVKVENGDGYKCTCGQIFQRRSRMETCLRSHTEYADTCQYVCPTCQKKFKTKDSLIFHRNKFHRKKFPCKFCPTDYQTQKELFKHLQVHQKVQLTEYKVIAEVAKGKQELNCLICSKSCKTLSDLKSHIMDDHENPYNCPYCSQNEFKEIMDFVDHMKKVHPDVGSQSVLDVVEAFSKLMKAWKCEECGQQFHEADKLALHQVEKHVPEMKNEQHFQCEDCQRVFITNQGLNSHRRMHHRVEPPEPTEPEEIGVMCLACRKMCKDMTALTSHMRLHSMDRKFPCKYCDFRFATPQKRKAHAEIHTGDMKYVCFICEYQCSSENRFKAHKASVKHLNMKEYLLTGKPLIEEQSTSKKEKIKDTLRKKEWNVKKRKRDRKEKESPIACDICGETFNGESAMQEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857036;
- 90% Identity
- -
- 80% Identity
- -