Xdes022412.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757055.1:710831-713737[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.12 8.4 7.6 1.0 1 23 251 274 251 274 0.96 2 15 0.063 4.4 8.5 1.9 1 23 279 302 279 302 0.96 3 15 0.00067 0.047 14.7 2.1 1 23 332 355 332 355 0.97 4 15 0.021 1.5 10.0 0.9 3 23 419 440 417 440 0.92 5 15 0.00058 0.041 14.9 1.8 1 23 446 469 446 469 0.93 6 15 0.0012 0.081 14.0 1.5 2 20 473 491 472 493 0.94 7 15 0.12 8.4 7.7 0.2 1 23 501 524 501 524 0.95 8 15 5.6e-05 0.0039 18.1 0.4 1 23 529 552 529 552 0.96 9 15 0.036 2.5 9.3 0.2 2 23 565 586 564 586 0.97 10 15 0.00091 0.064 14.3 1.5 1 23 592 614 592 614 0.97 11 15 0.00031 0.022 15.8 1.7 3 23 652 672 651 672 0.97 12 15 0.0029 0.2 12.7 0.1 2 23 716 738 715 738 0.96 13 15 0.00082 0.057 14.5 2.2 1 23 744 766 744 766 0.99 14 15 0.0018 0.13 13.4 6.7 2 23 773 794 772 794 0.96 15 15 0.019 1.4 10.1 2.3 1 23 800 823 800 823 0.96
Sequence Information
- Coding Sequence
- ATGGATCCAAACCAGATGCCCAAAACTCAGAAAGAGATTCAAAACGAAATATGGCTGAAATCTCGCATGAGGGCTGTTTGGACTGCACCTAAGTACTGTGTGCTCTGTCTAGCAACGGATACTGAGTATTACTCATTAAGCATGGAGTTTACTCGCAATCAGGCTACATCCACAATGCCGTTGAGGGATGTTGTTAATTATGTCTTCAATTTTGAGATTGAAGACTACTTACCAAGTGATAACATATGTATCAAATGTGTGGAAAAAACCATCCAGGCATACATATTTATCATCAACACAAAGAAAACATATAAAATCCTGAATAATTGTGTCAATGATATGCAATCAAAAGTTGATGATATTGACTTTACTCTGACTGATGACTGTCAGTATGAAAACTCCAATGTAGTGATCGTAGTTGAGTATGACAATGAAACATTTGAACTAATAAATGACCTAACATCAGGAAACAATGCTATTTTGACTGAAGAACCAATCATAGTAAGGAAAGCAAGCACAAATTTGAACACAACTCTTAATTTGAGTGTTACTGCTAGAGACGATAAAGAAAACTCAGGTCCTGTAGTGATACCTACACCTAGAGTGGAGAAACATCCAAGAACCAAGTTTGCAAAGAAACAGATCATTGATGAGAAGGTACCTACTCCGAATGTTACCTTAAAAGAGGGTAAGATTGTAATTGAACCACTGGTTACCAGCAATGTACCATCAACACCAAGATTCAACACTTATGCATGCAATTCTTGTACCGATATATTTACAACGTACAGATCTTTAAAAGAGCATGAGAAAGTCAAGCACAACTCGGTCATCttcaaatgtaggtactgtGTTAAACTCTACAACACACAACAGTACCTCGATGTACATTATCTGTCCTCACACGGCAAATCTAGATGTCGATTCTGCAAAGACTTAGTTGAATCCGACAAACTTAATGATCACCTTAAAGAAATGCATCAGAAATTGATCTATGAATGTTCGGATTGTGACTTGGTATACTACAACCATGACAAGCTTGAAACTCATAAAAAATCAAGTCATTTAGGCCAAGTTGTGCCAGCAGAGGGAAAAAAACAGTGTATTATGTGCCTTAAGAGCTTAAAGGAGATTGAGGAAGCTAGTCATAAATGCAAGTTTTCATGTTTAGAATGCCCGAAAGTCCCTTGCGTTCATTACAGTTACTTAATGTCATACCGAGAGCAGGTATTAAACCATTCACCTAAGATCCGGTGTATTGACTGTGATTACACAACAAAAAGAAAAGAACACTTAATTGGTCATGTTAATAGAGAACATTTGGATTACCATCCATTTACTTGTGATGATTGCGGAACACAGTTTTACACTAAACTATCCCTTAAAACCCATGTTACACAGTTTCATAGGGACTTAAAATGTGAGTACTGTGACACTGAGTTTAAGAGTACAAAATTACTGCAAAAGCATAGACATGGATGCAAATTAATTAGTCGGAGGTATAGTTGTCTTAAATGTGTGGCATCGTTTGACACTACTGTGGAACTTGAAGAGCATTCACAAATTAGGCACAGCGAGTTTGTATATCCTTGTTCTCTATGTAACAAAGAGTTCCCTGACAAAGACTCTTTGGAAGAACATCACGCTAGAATTCACAGTGGCATTCAATACAAGAAACGACGGAAAATAATTGAATGCACACTATGCGATATCACTTTTATGAACATCAAATCAATGCTTGAACATGAGAAAACTCACTCTCCAGACGAAGTTTTCCCTTGCAAAGTCTGCCCGAAGACTTTCTCCAATCTTAAAAAGATTTATATACACAAACAGAGGCATTACTCGCAGAGAATTAAGTGTAAAGCCTGTAAAAAGACTGTGGCTACATCATATTTGATACAGCACAAGGCATTATGTCCGGCTATTAAGTCGAAGGAGTCAAGAAATATATGTGAAGTTTGCGGGAAGTTCTTCCATCTACAATCCAGTCTTAAGACCCACTTACAACTTCACAATAGATTAGAACCATGCATACATTGTAATAAGATGATTAAGCCAGCCTCAATGAAACGACATATTGAGTTAAAACATGCATTGTACTTTCAAAATGAAGAAGAAACATCAAAAACTGCTCACCTGTTACGATGCGATGAGTGTGGGTATGTGGCACGAAAAAAGGCTGATTTTGAGAACCATGTCAACAAAATTCATTTGAAAATCAAACCGTATAGCTGTGAGTTATGTAAAAGACAGTTTTGCGGCAAACCCAGATTGGCAGAGCACATGAGAACCCACTCGACAGCTAATTCTTGCTTCTGCTCATTCTGTGGCAAGAAATTTGCGAATAAAGTGTGCTTGAAAATGCATGTTCGTAGACACACGGGGGAAAGTCCTTACGAATGTAACATATGCTTTGAAAAGTTCCGATCATCGAGTATTATGAAGACACACAGACTAAAGAAACATCAGGATAAAACGATATCATGTCCGCTATGTGATTCCATGTATCATATCGTGGCAGAAATGAGATTCCATGTTAAGAAAGTACATTGGAAGAGTTCAGAGCCTTTTGATTATAAGAAAATAGTGCCGGAAGAGTTCCATCATCTCTTTCAAGATAGGAGACTTCAGAAACTTGGGGATGAATCTGAAGTTTTTATGGACAATACGGAATATACTGTGATAGGGATGTAA
- Protein Sequence
- MDPNQMPKTQKEIQNEIWLKSRMRAVWTAPKYCVLCLATDTEYYSLSMEFTRNQATSTMPLRDVVNYVFNFEIEDYLPSDNICIKCVEKTIQAYIFIINTKKTYKILNNCVNDMQSKVDDIDFTLTDDCQYENSNVVIVVEYDNETFELINDLTSGNNAILTEEPIIVRKASTNLNTTLNLSVTARDDKENSGPVVIPTPRVEKHPRTKFAKKQIIDEKVPTPNVTLKEGKIVIEPLVTSNVPSTPRFNTYACNSCTDIFTTYRSLKEHEKVKHNSVIFKCRYCVKLYNTQQYLDVHYLSSHGKSRCRFCKDLVESDKLNDHLKEMHQKLIYECSDCDLVYYNHDKLETHKKSSHLGQVVPAEGKKQCIMCLKSLKEIEEASHKCKFSCLECPKVPCVHYSYLMSYREQVLNHSPKIRCIDCDYTTKRKEHLIGHVNREHLDYHPFTCDDCGTQFYTKLSLKTHVTQFHRDLKCEYCDTEFKSTKLLQKHRHGCKLISRRYSCLKCVASFDTTVELEEHSQIRHSEFVYPCSLCNKEFPDKDSLEEHHARIHSGIQYKKRRKIIECTLCDITFMNIKSMLEHEKTHSPDEVFPCKVCPKTFSNLKKIYIHKQRHYSQRIKCKACKKTVATSYLIQHKALCPAIKSKESRNICEVCGKFFHLQSSLKTHLQLHNRLEPCIHCNKMIKPASMKRHIELKHALYFQNEEETSKTAHLLRCDECGYVARKKADFENHVNKIHLKIKPYSCELCKRQFCGKPRLAEHMRTHSTANSCFCSFCGKKFANKVCLKMHVRRHTGESPYECNICFEKFRSSSIMKTHRLKKHQDKTISCPLCDSMYHIVAEMRFHVKKVHWKSSEPFDYKKIVPEEFHHLFQDRRLQKLGDESEVFMDNTEYTVIGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267469; iTF_00661595;
- 90% Identity
- -
- 80% Identity
- -