Xdes023602.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757057.1:3952854-3961478[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.45 31 5.9 2.6 1 16 276 291 276 299 0.85 2 12 0.0029 0.2 12.7 0.1 2 23 306 327 305 327 0.95 3 12 0.17 12 7.1 0.2 1 23 358 380 358 380 0.96 4 12 0.035 2.4 9.3 4.4 1 23 383 406 383 406 0.97 5 12 9.6e-05 0.0067 17.4 1.3 2 23 428 449 427 449 0.96 6 12 0.00033 0.023 15.7 0.5 1 22 454 477 454 480 0.91 7 12 0.057 4 8.7 2.7 3 23 544 564 543 564 0.98 8 12 0.00041 0.028 15.4 0.9 1 23 570 593 570 593 0.97 9 12 1.3e-05 0.00091 20.1 3.7 1 23 597 619 597 619 0.98 10 12 6.4e-05 0.0045 17.9 2.7 3 23 627 648 626 648 0.94 11 12 9.2e-06 0.00064 20.6 3.4 1 23 654 676 654 676 0.97 12 12 3.8e-05 0.0026 18.7 1.3 1 23 682 705 682 705 0.95
Sequence Information
- Coding Sequence
- ATGGAGACAGAATTTGAAGATGAAATACACTTAGATGATGCAAGTCTTGAAGATGAGTCAATAGCAAATGATGCAAGTGTTGAAGATGAGTCAATAGCAAATGATGCAAGTGTTGAAGATGAGTCAATAGCAAATGATGCAAGTGTTGAAGATGAGTCAATAGCAAATGATGCAAGTGTTGAAGATGGATCAATAGAAACTGACACAGAGTTAGCACTAAACAATTATGACAGTGACATGACATATTACAGTGACTATGATTGTGAGTCAGATCTCAGTGAATGTGAATTGCCGCTAAGgaagaacaaaacaaaaacagtacttaaaaataatttaagtggCAAGAAAACTGATAAACAGATAAGCATAGATGCAGAAAACGAAAAGATCACAGCGGATCAATTATCAGCGGTACTAAATGAACCATTTGATATAAACGATATCAACTATGAAGATATAAAGTTTGTGAGGAAGTTACTGACGCCGCACCAAAAGAATAAGTTCGACTTTCTACTAGAGGTTGAAAAATTGAAGATGCGTTGTCTCAATCTTTTGGATGAAGGGATAGATTTGGGTGATGTGAAAATGACTAAGGAGCTGTTCCTCGAATTGTTTGCAAAGTGCGATAGAAGTTATATAAAAATGATTGGAGTTGTTAATCATAtGGACAACACACCAAAAGTGAAGAAATTTATGCTGTACATCCACAAAAGATACAACCCAGAGTATGAAACCATATTCAAAATCGACTACCTCATTACTCGGGAGCAGAAAATAGAAGAGTATGAGTCAAGGAAGAACAGCAAACAATATATTGAAGCTTTGTACAAGTGTGAAAAATGCTATTTACCATTTACTCATCAGGCCAAATTGGATTTTCATTCGTTGAAGTATCATGATCCGAAACTACCGCTCATGTGTGATATATGCCCGGCGAGGTTTCCAAAGCGTGCGCCGTTAACGAAACACCAAATATACCACTACTCGGTGTATCGCTGCAAACTGTGCGCTGTGTTCACttattatttTGAAGGAATGTTGAATCACTACAATCAGCATAAAGGCAAGCTATACACTTGCGACATTTGTTTAGGCCAGTATGGAAGCAAGAGTACATTGAACGGTCACCGTCTGGCGCACGCGAGGTTTACATGCGAGATCTGCGCGCGCAAGTTTCACTCGCAACACTATCTCGACGATCATGTGCAGCGAAAACATGCCAACGCATCGCCCACTCGCGTCGAGTCGCCGGCCGTCGCGCCGTGCGGCAAAACTTCGCTGTCGTGCGACAAATGCAACGCCGTGTTCAAGTCGCAGATATTCCTGCGCAGGCATATGACCAAGCACGAAACACTGTTctacAAATGCCGCTCTTCTATCTGCAATGAAAAGTTTTCTTCTGCTTCCGAACTTCGAGAACACACGCTCAGCACGGGCCACTATTTCAGCCGAGAGGATAAGGCAATAGTCAGGGCCAAGTCCGTGCAGAAAGGAAACCCAAGGCTTTATAAAACCTGTCCCGTGTGTCACATGCGAGTATTGGACAGTTTTCCGACCTCTATGTACGCTCACCACCATCGGTTGCATCCCGACGTGCCGTACACCCATGAAAACGAGTACAACACGCTTTGTGAGCAATGCGGGCAGTCATTCTGGCATCATAGTCTCTACCTCGACCATCTCAACACTCACACCGGAGAGAAACCATACGCGTGTAAGGACTGCGACGCACGCTACAGCACGCGACGCCTGCTCTACTCACACAGGATGAAGGTTCACTGCCGCCAGCACAAGTGCAAAGACTGTGGGAAGCAATTCTATAACCGGACTAGTTATATCAATCATATCAAAGTGCATACAGGAGAGAAACCGCACGGATGCCATCTCTGCGGCAAGAAGTTCACACAAGAACAGCATTTAAAAGCGCATATAATATTTATGCATACAACAGATAGACCTTTTGCTTGTGAGCTGTGTAATAAGAGGTTTAAGCGGAAGAGCTGTTTGTCTTTACACATGATGGTGCATACGGGTCAACGACCCCATCCGTGTGAATTGTGTGATAAGCAGTTTTATAGGAAAAGAGAGCTGAAAGCGCATGTTTTGAAAATACATTCTTGA
- Protein Sequence
- METEFEDEIHLDDASLEDESIANDASVEDESIANDASVEDESIANDASVEDESIANDASVEDGSIETDTELALNNYDSDMTYYSDYDCESDLSECELPLRKNKTKTVLKNNLSGKKTDKQISIDAENEKITADQLSAVLNEPFDINDINYEDIKFVRKLLTPHQKNKFDFLLEVEKLKMRCLNLLDEGIDLGDVKMTKELFLELFAKCDRSYIKMIGVVNHMDNTPKVKKFMLYIHKRYNPEYETIFKIDYLITREQKIEEYESRKNSKQYIEALYKCEKCYLPFTHQAKLDFHSLKYHDPKLPLMCDICPARFPKRAPLTKHQIYHYSVYRCKLCAVFTYYFEGMLNHYNQHKGKLYTCDICLGQYGSKSTLNGHRLAHARFTCEICARKFHSQHYLDDHVQRKHANASPTRVESPAVAPCGKTSLSCDKCNAVFKSQIFLRRHMTKHETLFYKCRSSICNEKFSSASELREHTLSTGHYFSREDKAIVRAKSVQKGNPRLYKTCPVCHMRVLDSFPTSMYAHHHRLHPDVPYTHENEYNTLCEQCGQSFWHHSLYLDHLNTHTGEKPYACKDCDARYSTRRLLYSHRMKVHCRQHKCKDCGKQFYNRTSYINHIKVHTGEKPHGCHLCGKKFTQEQHLKAHIIFMHTTDRPFACELCNKRFKRKSCLSLHMMVHTGQRPHPCELCDKQFYRKRELKAHVLKIHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -