Basic Information

Insect: Xanthorhoe designata
Gene Symbol: -
Assembly: GCA_963582015.1
Location: OY757044.1:7082852-7093571[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00047 0.033 15.2 0.2 2 23 146 167 145 167 0.93

2 11 0.00069 0.048 14.7 2.4 1 23 173 195 173 195 0.96

3 11 7e-05 0.0049 17.8 0.2 1 23 293 315 293 315 0.98

4 11 1.2 87 4.5 0.3 2 23 322 344 321 344 0.92

5 11 0.00024 0.017 16.1 0.0 3 23 396 417 394 417 0.90

6 11 0.058 4 8.7 0.6 1 23 434 456 434 457 0.93

7 11 1.1e-05 0.00079 20.3 0.2 1 23 484 506 484 506 0.98

8 11 0.00074 0.051 14.6 0.2 1 23 512 534 512 534 0.97

9 11 0.00042 0.029 15.4 0.3 1 23 540 562 540 563 0.95

10 11 0.3 21 6.4 0.5 1 23 578 600 578 600 0.97

11 11 0.0035 0.25 12.5 0.1 1 20 749 768 749 771 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00047	0.033	15.2	0.2	2	23	146	167	145	167	0.93
2	11	0.00069	0.048	14.7	2.4	1	23	173	195	173	195	0.96
3	11	7e-05	0.0049	17.8	0.2	1	23	293	315	293	315	0.98
4	11	1.2	87	4.5	0.3	2	23	322	344	321	344	0.92
5	11	0.00024	0.017	16.1	0.0	3	23	396	417	394	417	0.90
6	11	0.058	4	8.7	0.6	1	23	434	456	434	457	0.93
7	11	1.1e-05	0.00079	20.3	0.2	1	23	484	506	484	506	0.98
8	11	0.00074	0.051	14.6	0.2	1	23	512	534	512	534	0.97
9	11	0.00042	0.029	15.4	0.3	1	23	540	562	540	563	0.95
10	11	0.3	21	6.4	0.5	1	23	578	600	578	600	0.97
11	11	0.0035	0.25	12.5	0.1	1	20	749	768	749	771	0.93

Sequence Information

Coding Sequence: ATGGATGGAGACAGGGAGTTCAACCTCCATTGGGGGGGAGGGGAAGTAGTCATAAAGCATGATCCAGATAATCAACCAATATGCAGCATTGAAAATGTGCATGGAGATTATCAAAACATGACTCCAGAGGAGATAATGGCGAACACAGATCAAATGGCAGCGGAGAACCTAATGTTCTTAGCCCAGGATGTGATTGGTTACACAGAGACTGCAGAGTTGGCCGATGACCCCAGTGTTGAGTGTGTGACTGAGGAAGTTGTCACTGATGATTGGGTTGTTGATGGTGGGCAGGAGAGGATGGAAGTGCAAATGGAACATTTAACAAACACAATAGATCTACATGTAAAGGAAGAAAATGATGTTGATGTGCCTATACCAATAGAacaaGAAATCAACCTACATTCACAAGATGAGTACACGGCGATGCGACCATGGCCTTGCGATTTCTGCTCGCGTCGGTTCCGCAAGAAAGCGGCGCTCATGAACCACATGGTCGCCCATCAGAATGATAGACCTCACGCCTGCAATCTGTGCGGAGTGCGTTATGTGCGCAAGTGCGACCTTATGAATCATTTGAAGGTTCACGCTTTCGTTCCGGATAATGCTGATTCGGTGGACTTTGAAGAACTGCTAGAGAATAACCAAATtgcaaaaccaaagaaaaagCGGGGCAGGCGGAAAAAGATACCTGAGCCAGAAGAGGATGAATGGGAGAACATGACGTCAGCACGGACACAGCAATGGTCCCGCCGAGGTCGGTCGCCGGCTAAGCCGCCGCCGTCGCCACCGCCGATGTCACCTCCATCACCGCCGTCGCCGTCAACGCCGCCGTCACcgccgtcgccgccgccgccgccagctgACCCGTCGCGACCGTTCGTCTGCAAGACTTGCGGCATCGGCTTTGCGAGGGAGAAGGCACTACAGTCGCATTCTAggGTTCACGGCGGCGACTCCCCGATGGAATGCAGCGAGTGCGGCGAGCTGTGCTGGTCGCGCGATGCGCTCGCCAATCACGTGCAGCAGAAGCATCCACATCTGCCGCCTCGTACTGCGCATGACACCAATTACAATGAGTCAGACTCGGGTGATGACATGGATTTCCGTCTGTCCCCGGAGTCAGCGCCGAGCGGCGGCGTGTCCGAGCGGCCGGTGTACGATAACTCGCGAGGCCCCGAGCTGTTCTGCCCGGACTGCGGTGTCGCTTTCCAACGCGCCGACTTGCTGAGGCGGCATGTCGCGGCCGCGCATAGCTACAAGCGGGTCGCTCGCGGCAGTGGCTCGGGCTCGGGCTGGGAGCACACGTGCGACGCGTGCGGCGAGGCGTGCAGCGACGCGCTGCAGCTACTCGCGCACGCAGAGCTGCACCATCGCCGCCGCGCGCCCGCCAGGTTAAAAAAGTCGTCCAAAGGACGTAATAGCACGTCGATATCCAGTAATTCACGGCAATTCCCTTGTAGAGAATGTGGTAAAGTGTTCGGTTCGCGCAGCTCCCAACAGATCCACATTCGTATTCACACGGGCGAGCGACCTTACGCCTGCCGGTTCTGTTGGAAGGCCTTCGCTGACGGCGGCACGCTGAGGAAACACGAGAGAATACACACGGGTGAAAAGCCGTATGCATGCGCGGTTTGCCCGCGCGCGTTCAACCAACGAGTCGTGTTGAGGGAGCACGTCAGATCACATCACTCTGCGCCGGATCGCAGACAACAGGCAAACGgTGGTGCAGCGTATTCGTGTGTTGTTTGCTCGCGATCGATGCACACGAGTGTGGAGTTAGTGCAACATTTAATTCAGCACTGCGATGCGAATACTGCGTTGAAGAGACAACCACAGAACGGCCCCAGAAAATACAAGCGGCGGCGAAAGATAAAGAGCGAAGTATCTTCCGCGGTGCGGTCGTGGGCAaccccctccccccccgcctCGCCCTCCCCCCGCCCCTCCCCCGCGGcgtccccctccccctcccccccgtcccccgcgccgccgccgccggccccCCGCGCCGCGCCCGCATCGCCCCCGCGCCGCCGCTCCCGCCGCGAGCCGGCGCCGAGGCCCCGCATGATACACACCTCGGAGGAGACCAAGGCTAAGGTTAAGGTTAAGAGTGTACGGCAGCGTCGTCCGCCGCGTCACCCGGCCGACGACCTCCGAGCCATCGGTCCGCATTCCCCATCACCAAAACGCGAACTCGCCTCCTCCCCAATACCTGAAGAAATCCCAGACGAAGGCGGCCCCTATAAATGCGAAATGTGCTCGCAAGAGTTCCCTCGGAGAGACGCTTTGTTACTTCATGTGCCTGTACATATATGA
Protein Sequence: MDGDREFNLHWGGGEVVIKHDPDNQPICSIENVHGDYQNMTPEEIMANTDQMAAENLMFLAQDVIGYTETAELADDPSVECVTEEVVTDDWVVDGGQERMEVQMEHLTNTIDLHVKEENDVDVPIPIEQEINLHSQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNADSVDFEELLENNQIAKPKKKRGRRKKIPEPEEDEWENMTSARTQQWSRRGRSPAKPPPSPPPMSPPSPPSPSTPPSPPSPPPPPADPSRPFVCKTCGIGFAREKALQSHSRVHGGDSPMECSECGELCWSRDALANHVQQKHPHLPPRTAHDTNYNESDSGDDMDFRLSPESAPSGGVSERPVYDNSRGPELFCPDCGVAFQRADLLRRHVAAAHSYKRVARGSGSGSGWEHTCDACGEACSDALQLLAHAELHHRRRAPARLKKSSKGRNSTSISSNSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRQQANGGAAYSCVVCSRSMHTSVELVQHLIQHCDANTALKRQPQNGPRKYKRRRKIKSEVSSAVRSWATPSPPASPSPRPSPAASPSPSPPSPAPPPPAPRAAPASPPRRRSRREPAPRPRMIHTSEETKAKVKVKSVRQRRPPRHPADDLRAIGPHSPSPKRELASSPIPEEIPDEGGPYKCEMCSQEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00377360;
90% Identity: iTF_01529438;
80% Identity: -