Xdes023897.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757058.1:1778626-1785827[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0032 0.23 12.6 0.2 3 23 2 23 1 23 0.92 2 21 0.21 15 6.9 0.6 3 23 49 70 47 70 0.87 3 21 9 6.3e+02 1.8 0.1 2 23 107 129 106 129 0.90 4 21 0.26 18 6.6 0.1 2 23 158 180 157 180 0.94 5 21 8.3 5.8e+02 1.9 0.2 3 23 210 230 208 230 0.91 6 21 0.00027 0.019 16.0 0.3 1 23 234 257 234 257 0.97 7 21 0.05 3.5 8.8 0.9 1 22 261 282 261 282 0.94 8 21 0.0027 0.19 12.8 0.5 3 22 291 310 289 312 0.90 9 21 0.0002 0.014 16.4 3.1 1 23 319 342 319 342 0.97 10 21 0.13 9.1 7.5 2.7 3 23 349 369 347 369 0.93 11 21 0.00057 0.04 15.0 1.6 1 20 375 394 375 397 0.94 12 21 0.076 5.3 8.3 2.1 1 16 403 418 403 420 0.86 13 21 2.3 1.6e+02 3.6 0.8 2 23 502 524 501 524 0.92 14 21 0.005 0.35 12.0 0.1 3 23 551 571 549 571 0.95 15 21 2.4 1.7e+02 3.6 2.8 1 23 575 598 575 598 0.92 16 21 0.22 15 6.9 1.6 1 22 602 623 602 623 0.94 17 21 0.18 12 7.1 1.9 1 23 630 653 626 653 0.88 18 21 5.1e-05 0.0036 18.3 0.2 1 23 660 683 660 683 0.97 19 21 0.0022 0.16 13.1 1.6 1 23 688 710 688 710 0.93 20 21 5.8e-06 0.00041 21.2 2.7 1 23 716 738 716 738 0.99 21 21 9.4e-06 0.00065 20.6 0.6 3 23 746 767 744 767 0.95
Sequence Information
- Coding Sequence
- ATGTGCGTCATTTGCAACGAGAGCTTCACAGAAGCCATGCAGTTCAGGACTCATATGGACGAGGAACATAAAGAATTCAACCCAGAACATGCTTTTACACATCTCTCTCACGGCCATCTCAAACTGGATATCACAAAAATGTGTTGTCGTATTTGCAATCTGCCGTTCCGCGACCTACAAAAATTTGCCGAACATTTAGTTGAAATTCATTCAAAAAAATTAGATCTTGATATTGACCTAGttcACGAGAAATGGAACGCGTCGCTCGTGTTAAAGTATACGACTCTGTACCCATTCAGATTGCGAGGCCTGACTTTGGTTTGCGTTTACTGCTGCGAAGAATTTGAAGAGCCAGATGCATACAGAGGCCATATGGATGAAATGCATAAGAAATTTAATATGATCACTGCTTTCGCGCACACAAGCAATTTTAGGGCTAGAGACTACGTCAAGGTTGACTGCGTTAACCTTAAATGCAAATTGTGCATGCAGCCTTTTAATTCAGTCGATGATGTTGCTCGACATCTTAAGGAAATTCATAACGGTatcgaattaataaataaaaacctcaATTTGGATTATGAAGTAGGCGTGCACCCGTATCGTTTGTTGAAAGATAAGTGGAATTGCAtgatttgcaatatgaaaatgCCGGGTTTGACGAAGCTCGCAAGGCATACGTCCTCTCATTACGCCGATTACGTTTGCGAAGTATGCGGCAAGAACTACTTGAATAACGAGAATTTGAAGTTGCACGTGAGGTACAGCCACACCGATAAACATATTTGTAGGAAGTGCAAAACTGAGTTCCCCTCGCAGGAAGAACGCAAGGAGCATATCAAAACATCAAGGAAGTGCTGGTCATTTGGTTGCGTTCATTGCGGGGAGAGATTCTCCTCTTGGGAACAGAAACAGAAACATTTGGTCGCTGAGCACAACGTTAAAGAGATGACATACCCTTGCCCTGACTGTAGTGTCGTGTTCAAAACTAGAAAACACTTCTACAATCATTACTCTACAACGCACTCTGATCAAGCCTTGAACTGCTCATGCTGCGGCAAGAAGTTTCAGTATAAGAATCAGTTGGACGAACATCAGACTGTCCACACCGGAGAGAAGATGCATCAGTGCACTGTGTGCTTTAAATCCTACGCTACAAAGAAGTCATTGGTACAGCACATGTGGATTCATAACGAGATGAAGAGATTCTCCTGCTCCATTTGTAATAGAACCTTCAACCAGAAAGTTTGCTACAATGCACGCGATCAGGCGAATCGGAACGCTGAATTAGTGCTACAGAATTCCACAGTGTATCCGTTCAGACTACACGGCAAACACTTGATGTGCGTATACTGCTGCGATGAAATGGAAGACCCAGAAGAATTTAGATGCCATATGGATAATATGCATAAGAACGCCAATCTATTTGTTGCTTTCGCGCACGTTAAATCCCGAAACAGAGCGGGTGAAAGAGACTACCTGAAAGTAGACTGTACTAATCTCAAATGCAGACTTTGCAATGAAACATGCGATACAATCCCCCTCGTTGCACAACATCTTAAAGAAAAACATGATAACGAATCCAAAGATTTAGACCTAGACTATGAAGTTGGCTTGCATCCGTTCCAATTAGTTAAAGACAAATGGATCTGTATGATGTGCGATATTAAACTCCCAACGTTGACCAATCTGGTCAGGCACATGTCATCGCATTTTTCGGATCATGCCTGCGATTTGTGTGAAAAAACCTACTTGACGgttcaaagtttaaaatatcACAAAAGGTTCTACCATTCGACGGATCACATCTGCAGGAAATGCAGAATGGTGTTTTCTACGTTACAAGAGAAAAAGGAACACTTGAAAACTTCCTCGAAGTGTTGGGGCTACGCCTGTATTCATTGTAGTGCAAGATTCTCTAATTGGGATAGCAAACGGAAACACTTGGTTAGCGAACACAATGTTAAAGCTATCACGTACCCATGTCCGGATTGCGGGGCTGTATTTGACTCTGCTTCTAACTTCTACTATCATTTTAAGATGTCGCATACCGAGTTGCCGCATATGTGCTCGTATTGCGGTAGGCGGTTCCTGAAAAAAAGTCAGCTTGAAGATCATTTAGGCGAGCATACCAATCAAAAGAAATTTCAATGCAAAGATTGCTCAAGGGCGTTCTCTACCAAGAAAACTTTGTGGGATCATAAGAAGACCCACCTAAAGAAAAAGAGGTTGGACTGCTTGTATTGCGATAAATCGTTTACTGCTAAGGTTAACTTGAAGTCTCACATGAAAAATGTTCACAAACAATCATAA
- Protein Sequence
- MCVICNESFTEAMQFRTHMDEEHKEFNPEHAFTHLSHGHLKLDITKMCCRICNLPFRDLQKFAEHLVEIHSKKLDLDIDLVHEKWNASLVLKYTTLYPFRLRGLTLVCVYCCEEFEEPDAYRGHMDEMHKKFNMITAFAHTSNFRARDYVKVDCVNLKCKLCMQPFNSVDDVARHLKEIHNGIELINKNLNLDYEVGVHPYRLLKDKWNCMICNMKMPGLTKLARHTSSHYADYVCEVCGKNYLNNENLKLHVRYSHTDKHICRKCKTEFPSQEERKEHIKTSRKCWSFGCVHCGERFSSWEQKQKHLVAEHNVKEMTYPCPDCSVVFKTRKHFYNHYSTTHSDQALNCSCCGKKFQYKNQLDEHQTVHTGEKMHQCTVCFKSYATKKSLVQHMWIHNEMKRFSCSICNRTFNQKVCYNARDQANRNAELVLQNSTVYPFRLHGKHLMCVYCCDEMEDPEEFRCHMDNMHKNANLFVAFAHVKSRNRAGERDYLKVDCTNLKCRLCNETCDTIPLVAQHLKEKHDNESKDLDLDYEVGLHPFQLVKDKWICMMCDIKLPTLTNLVRHMSSHFSDHACDLCEKTYLTVQSLKYHKRFYHSTDHICRKCRMVFSTLQEKKEHLKTSSKCWGYACIHCSARFSNWDSKRKHLVSEHNVKAITYPCPDCGAVFDSASNFYYHFKMSHTELPHMCSYCGRRFLKKSQLEDHLGEHTNQKKFQCKDCSRAFSTKKTLWDHKKTHLKKKRLDCLYCDKSFTAKVNLKSHMKNVHKQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -