Xdes022435.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757055.1:1057369-1075943[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.032 2.3 9.4 0.1 1 23 405 427 405 427 0.96 2 11 6.6e-05 0.0046 17.9 0.6 1 23 438 460 438 460 0.97 3 11 1.1e-05 0.00074 20.4 2.6 1 23 466 488 466 488 0.98 4 11 4.3e-06 0.0003 21.6 1.5 1 23 495 517 495 517 0.99 5 11 9.4e-05 0.0066 17.4 0.2 1 23 523 545 523 545 0.93 6 11 1.2e-05 0.0008 20.3 0.1 1 23 551 573 551 573 0.97 7 11 5.6e-06 0.00039 21.3 1.5 1 23 579 602 579 602 0.96 8 11 4.9e-06 0.00034 21.5 1.6 1 23 608 631 608 631 0.95 9 11 2.2e-05 0.0015 19.4 0.5 2 23 638 659 637 659 0.97 10 11 3.2e-05 0.0022 18.9 1.1 1 23 665 687 665 687 0.97 11 11 0.0035 0.25 12.5 0.1 1 23 693 715 693 715 0.97
Sequence Information
- Coding Sequence
- ATGACGGCTTGTTTAGTTTGTAACACCCTGAAGCCTTCCAGAGCTAAACATATTCCAAATATCTTTGATGAAAATGCAACTTCATTCTCAAATGACCGTAAACTCCTGGATACACTATGTGAAATCCTTGGCACAAGATTGAAGGAGGAAAATGTACATTCTAAAAGGCTCTGTGCTGATTGTTACAAAAAATGCATGAACTATGACATGtataaaactaaTGTGACTGTGTTGCAAACGAAACTGTGTCAACTATACCACTCTACACAAGAGAGGGAGAAAATCTTGGCTCCAAAACCTAGCAAAGTGTCGCCAAAGAAGCCCAAGGGATTTGTGGTACCAGCTTCCAAACTGCAGCCTCTACCCGCTGATTATCAACTCAATTTGGGTAAAATAGCTGCTATGGCCACTcctaagGTCTCAAAACCGTTGCTCAACCTAAAAATGACCATAGGCAACTCAGTGCTAACACAAAGTCTAGCCACCTCTACGGTCAAGATTGTGAAACCTGGTGAATTAAACTCTAACATCGATATAGGCGAGTGGACGGTTAATGGTCTGCCTAGCGAGATCTTCACGGGCAATGAGAGTGAGAATGGAGACAACCCGGATATGGAGATTGATGAagaATGCAATGTCCCAGTCTCTCAAAGTGAACCTACTTCTGTGGACAATATAAAGATCGAAAGTGCAGACAGTAATAGGTACTCGGAAGACTATGAACTGCTTTTAGACGGACAGTCAGAAGGTGAACAACCGCATACAATAGTACTGGACAGCGACAGCTCGATACTGCAGATGATGTCGGGGCAGAAGCTCGTGTACGAGAACGGTCAGCTCTCGCTCGTGACGGACGAGGCGGGCGATGATGGTGATGATACCAGTGCACAAGattcaaACGATGAGGAATCTCAGATTGAATTACAAGTTTCTGGTGACGAAGAAACTGCGAATGCTATCATAGCGGCCGCTCAGGAGCAAGGTGGTGCCTTCATAAAGGTGGAAAGTGGTGAAATGTACCGAGTGAAGTCAGTTCAGAGCACGCCTTCCGAGTGTATCCTGCCGGACACGGCCACGCAACTGGTGACCAAAGATGGTGAACAGTTCCGATGTCTTGTGTGTGATAATCGACTTGgGCCCATTAAAATGACGTTCACAGCAGACGCACACACGATGGTGAAACATATGAAAAGTGAGCACGCGGCCAAGTTATATATCTGCGCGCTCTGCGGTGTTATCATGAGGAATCGATCTGAATATACTACACATATGACGGAGCACACGAAGAAGACCCCGCCTACCTCGCGCTCGTACGCGTGTACGGAGTGCGGGAAGCGCTACAACTCGCGCACATTGCTGCGCGAACATTCCAACATACACTCCGGAGCGCGGCCGTACGCTTGCCATCTCTGCGGGAAGACATTCGCCTCTAAGTACACTAGACAGGCACATCTCAAGACACATCAGatccgACCCCGTCCCTATAAATGTCCAACGTGTGGAAAATCATTCCTGTCGCAGCAGAATCTGACGCAGCACGAGAAAACACATCTTGGAATCAAGAGTTTCGTCTGTAATGTTTgcaATAAAGCATTCGGCACCCAGCACAGTCTGGAGGTGCACGGTGTAGTGCACAGCGGACGCAAGCCCCACGTCTGCTCGGTCTGCGATAAGGCCTTCGCCAGACGGGCAGAGCTGGCTGACCATGCTAGAATACACACGGGTGAGCGTCCGTTTGAGTGCGAAGTGTGCGGCGCCAAGTTCTCTCAGAGATCCAATCTCCACTCGCACCGCCGCGCCACGCATCTGGACGACAAGCGACACTCCTGCCCGGACTGTCCCAAACGATTCAAACGGAGACGATTGCTCCAGTACCACATAAAGGCCGCGCACACCGGCGAGCGTCCCCTGCAGTGCGGCGTGTGTAACGCTTCCTTCGTGTATCCAGAGCATTACAAGAAGCATATCCGGATACACAATGGAGAGCGACCTTACTATTGCGAGATCTGCGGCAAAGCCTTCAACTCTCGCGACAACCGCAACACCCACCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCCTCGCGTGCGGCGCCTCCTACATGCGCAAGCGCATGCTCGTCGCGCACATGAACGCACATGGCCATTTAGCGGAATCAATTGTAGTAAATCAACCAAGAGTTACGAAAGTTAatgaaaatttaGTAACGGAGAAGATAGAAGCGGATTTCGAAGAGGAAAAAGATGAAGAAGAGACTCAGCCCGAGGCTCCTATAATTACAACAGGGGATACGGAGAACATTGAACTACCACAGGTGATAGATGAAAACAGCGGAATCGTCCGATTCATACAAGTTAAGATGCCAGACGGACGAGATGGATGGGTGGCCCTCAATGATTGA
- Protein Sequence
- MTACLVCNTLKPSRAKHIPNIFDENATSFSNDRKLLDTLCEILGTRLKEENVHSKRLCADCYKKCMNYDMYKTNVTVLQTKLCQLYHSTQEREKILAPKPSKVSPKKPKGFVVPASKLQPLPADYQLNLGKIAAMATPKVSKPLLNLKMTIGNSVLTQSLATSTVKIVKPGELNSNIDIGEWTVNGLPSEIFTGNESENGDNPDMEIDEECNVPVSQSEPTSVDNIKIESADSNRYSEDYELLLDGQSEGEQPHTIVLDSDSSILQMMSGQKLVYENGQLSLVTDEAGDDGDDTSAQDSNDEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSTPSECILPDTATQLVTKDGEQFRCLVCDNRLGPIKMTFTADAHTMVKHMKSEHAAKLYICALCGVIMRNRSEYTTHMTEHTKKTPPTSRSYACTECGKRYNSRTLLREHSNIHSGARPYACHLCGKTFASKYTRQAHLKTHQIRPRPYKCPTCGKSFLSQQNLTQHEKTHLGIKSFVCNVCNKAFGTQHSLEVHGVVHSGRKPHVCSVCDKAFARRAELADHARIHTGERPFECEVCGAKFSQRSNLHSHRRATHLDDKRHSCPDCPKRFKRRRLLQYHIKAAHTGERPLQCGVCNASFVYPEHYKKHIRIHNGERPYYCEICGKAFNSRDNRNTHRFVHSDKKPYECLACGASYMRKRMLVAHMNAHGHLAESIVVNQPRVTKVNENLVTEKIEADFEEEKDEEETQPEAPIITTGDTENIELPQVIDENSGIVRFIQVKMPDGRDGWVALND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -