Xdes023775.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757058.1:489974-493806[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.027 1.9 9.7 2.2 1 23 155 178 155 178 0.94 2 19 0.47 33 5.8 0.0 2 23 205 227 204 227 0.95 3 19 0.15 10 7.4 2.9 2 23 250 271 249 271 0.97 4 19 0.00031 0.021 15.8 0.4 1 23 275 297 275 297 0.91 5 19 0.0021 0.15 13.2 4.2 1 23 302 325 302 325 0.97 6 19 0.003 0.21 12.7 2.3 1 23 331 354 331 354 0.96 7 19 0.0029 0.21 12.7 1.2 2 23 362 384 361 384 0.96 8 19 0.0018 0.12 13.4 1.6 1 23 390 412 390 412 0.97 9 19 1.5e-06 0.0001 23.1 1.3 1 23 418 440 418 440 0.99 10 19 0.013 0.89 10.7 1.5 1 23 592 615 592 615 0.94 11 19 0.47 33 5.8 0.0 2 23 642 664 641 664 0.95 12 19 0.45 31 5.8 3.9 2 23 687 708 686 708 0.97 13 19 0.0028 0.19 12.8 1.0 1 23 712 734 712 734 0.91 14 19 0.00051 0.036 15.1 2.3 1 23 739 762 739 762 0.97 15 19 0.003 0.21 12.7 2.3 1 23 768 791 768 791 0.96 16 19 0.00023 0.016 16.2 0.7 2 23 799 821 798 821 0.96 17 19 0.0011 0.079 14.0 2.8 1 23 827 849 827 849 0.97 18 19 1.5e-06 0.0001 23.1 1.3 1 23 855 877 855 877 0.99 19 19 0.0081 0.56 11.3 3.7 1 23 883 906 883 906 0.98
Sequence Information
- Coding Sequence
- atgataatatttattgttttctttgtaGGTGACATCCTCAACTACCAACACGTAAAAACGGAACTAGATGACTCGGAGGCATCGCTGGTAAAGCTCGAAGCAAGTCATGAACCACAGACAAAGATACGACGACAGATCAAAGCTGAAAAAACTATTGAAACCGTCGaaacatttcaaataataaatcttaGGCCTGCAGCTAAGCGCGCATCGGCTATTCAAAGAATAAAAATCAAACCCGCGACGGAACCTCCacccattaaaaaaataaaagtaaaagaagGACCAACTCGCGGAAAAAAACAGACTGATTTGTCACAAAATTGTGAATCGGTCATAAAAAGAATAAAACTAGCTCCTCCTAAGAAGAACTCTGAGCTTGATAAACATCGTTACAACATTCGGACGATATTGAAATGTTCCAATGCCACTCCGATACGATGCCATTACATCGGTAGTGGTTTTGTTTGTAGCTTCTGCAAATCTAGCTTCATCAAAGCAACCGATCTCAAAACGCACACCATTCATGATCACGATGAACAAACAAGAAGCAAGTTCATGCAGGGCATTGAGTTGTTTTCGTTTGTTGTCAAACTAGATATAACTTCACTCATCTGCAACATTTGCAGCTTGTCCATGGACACTCTTGAGTTGCTCATCGAACATCTTAACAGTGTACATCAAAAAGGGCTTCATACAGATATCAAAAATCATATCGCCTGCTTCAAACTCGATGGAGAGACGATGAAGTGTTATATTTGTTCGACACCGTATCAAAGCTTCAAATGTTTATACGCTCACATGAACAAACATATAACAAACTTTATTTGTGATGAATGTGGCGctggttttataaataaaaacaatcttcGACACCACTCCGATGCGCATAAAGTAGGCGCTTACAAATGTGATCTATGTGACAAAGTGTTTAACTCGTCGTTGAAAATGAGATCTCATAAACGACACACGCACACCGGTATAGCACTATACAAGTGCCAGCAATGCCCGGaaagatttaaaacaaaaaatgccAAACATAATCACATACAGGAAGCTCACGGGATAGTTTTACCGAGCATGAAATGCGACGCTTGCGACCGCATTTACAAAACCTACAAACAACTTCAAGTACATAAAAAAAGGGATCATTTGATGGAGAGAAATCATGTATGCCAGATATGTGACCTTCGGTTTTTCGATACAAGCAGGTTGAGAGTGCACCAAGTGACTCATACAAGGTCTCGTGACTTTAAATGCGAGCTTTGCTCAAAGACGTATTCTAGACGCGCTGGTTTGAGGGAGCATATGCGCTCCCACACCAACGATCGTGACATCCTCAACTACCAACACGTAAAAACGGAACTAGATGACTCGGAGGCATCGCTGGTAAAGCTCGAAGCAAGTCATGAACCACAGACAAAGATACGACGACAGATCAAAGCTGAAAAAACTATTGAAACCGTCGaaacatttcaaataataaatcttaGGCCTGCAGCTAAGCGCGCATCGGCTATTCAAAGAATAAAAATCAAACCCGCGGTGGAACGTCCAcctattcaaaaaataaaagtaaaagaagGACCAACTCGCAGAAAAAAACAGACTAAATTTTCGCAAGATTGTGAACTGGtcataaaaagaataaaaatagctCCTCCGTCCATCTTACCTAAAAACTTTGAGCTGGATAAACATCGATACAACATTCGGACGATATTGCAATGTTCTAATGCCACTCCGATACGATGTCATTACATCGGCAGTGGTTTTGTTTGTAGCTTCTGCAAATCTAGCTTCATCAAAGCGACTGATCTCAAAGCGCACACCATTCATGATCACGATGAACAAACAAAAAGCAAGTTCATGCATGGTATTCAGTTGTTTTCGTTTGTTGTCAAACTAGATATAACTTCACTCATCTGCAACATTTGCAGCTTGTCCATGGACACTCTTGAGTTACTCATCGAACATCTTAACAGTTTACATCAAAAGGGGCTTCATACAGATATCAAAAATCATATCGCCTGCTTCAAACTCGATGGAGAGGCGATGAAGTGTTACATTTGTTCGACGCAGTATCAAAGCTTCAAATGTTTATACGCTCACATGAACAAACATATAACAAACTTTATTTGTGATGAATGTGGTGctggttttataaataaaaaccaactcCACCACCACTCCGATGCGCATAAAGTAGGCGCTTACAAATGTGATCTGTGTGACAAAGTGTTTAACTCGTCGTTGAAAATGAGATCTCATAAACGGCAAACGCACACGGGTATAGCACTATACAAGTGCCAGCAATGCCCGGaaagatttaaaacaaaaaatgccAAACATAATCACATACAGGAAGCTCACGGGATAGTTTTAGCGAGTATCAGATGCGACGCTTGCGACCGTACTTTCAAAACCAACGAAGGTCTTCGAATACATAAGAAAAGAGATCATTTGATGGAAAGAAATCATGTATGCCAGATTTGTGACCATAGGTTTTTCGATGCAAGCAGGTTGAGAGTGCACCAAGTGACTCATACAGGGTCTCGTGACTTTAAATGCGAGCTTTGCTCAAAGACGTATTCCAGACGCGCTGGTTTGAGGGAGCATATGCGCTCCCACACCAATGATCGTAGATTTAAATGTTCGTACTGCGATATGGCATTTCTGCAAAAATGCAGCTTGAAGGGACATTTGCGTAGTCGGCACGATGCTGAATTAGAATGA
- Protein Sequence
- MIIFIVFFVGDILNYQHVKTELDDSEASLVKLEASHEPQTKIRRQIKAEKTIETVETFQIINLRPAAKRASAIQRIKIKPATEPPPIKKIKVKEGPTRGKKQTDLSQNCESVIKRIKLAPPKKNSELDKHRYNIRTILKCSNATPIRCHYIGSGFVCSFCKSSFIKATDLKTHTIHDHDEQTRSKFMQGIELFSFVVKLDITSLICNICSLSMDTLELLIEHLNSVHQKGLHTDIKNHIACFKLDGETMKCYICSTPYQSFKCLYAHMNKHITNFICDECGAGFINKNNLRHHSDAHKVGAYKCDLCDKVFNSSLKMRSHKRHTHTGIALYKCQQCPERFKTKNAKHNHIQEAHGIVLPSMKCDACDRIYKTYKQLQVHKKRDHLMERNHVCQICDLRFFDTSRLRVHQVTHTRSRDFKCELCSKTYSRRAGLREHMRSHTNDRDILNYQHVKTELDDSEASLVKLEASHEPQTKIRRQIKAEKTIETVETFQIINLRPAAKRASAIQRIKIKPAVERPPIQKIKVKEGPTRRKKQTKFSQDCELVIKRIKIAPPSILPKNFELDKHRYNIRTILQCSNATPIRCHYIGSGFVCSFCKSSFIKATDLKAHTIHDHDEQTKSKFMHGIQLFSFVVKLDITSLICNICSLSMDTLELLIEHLNSLHQKGLHTDIKNHIACFKLDGEAMKCYICSTQYQSFKCLYAHMNKHITNFICDECGAGFINKNQLHHHSDAHKVGAYKCDLCDKVFNSSLKMRSHKRQTHTGIALYKCQQCPERFKTKNAKHNHIQEAHGIVLASIRCDACDRTFKTNEGLRIHKKRDHLMERNHVCQICDHRFFDASRLRVHQVTHTGSRDFKCELCSKTYSRRAGLREHMRSHTNDRRFKCSYCDMAFLQKCSLKGHLRSRHDAELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -