Xdes023524.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthorhoe designata
Gene Symbol
-
Assembly
GCA_963582015.1
Location
OY757057.1:3539187-3549912[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.22 15 6.8 5.9 1 23 201 223 201 223 0.98
2 20 0.0044 0.31 12.2 3.2 1 23 229 252 229 252 0.95
3 20 0.00022 0.015 16.3 3.6 1 23 256 278 256 278 0.99
4 20 1.6 1.1e+02 4.1 1.8 1 23 283 306 283 306 0.95
5 20 0.06 4.2 8.6 0.1 1 23 311 334 311 334 0.92
6 20 9e-06 0.00063 20.6 3.8 1 20 340 359 340 362 0.94
7 20 6e-06 0.00042 21.2 2.0 1 23 368 390 368 390 0.99
8 20 0.00018 0.013 16.5 1.1 1 23 394 416 394 416 0.98
9 20 1.3e-06 9.3e-05 23.2 0.3 1 23 422 444 422 444 0.99
10 20 0.12 8.3 7.7 0.6 1 23 449 471 449 471 0.97
11 20 0.00075 0.052 14.6 0.9 1 20 478 497 478 502 0.95
12 20 0.15 10 7.4 1.3 2 23 511 529 510 529 0.82
13 20 3.1e-07 2.1e-05 25.3 1.2 1 23 535 557 535 557 0.99
14 20 0.00026 0.018 16.0 2.3 3 23 565 585 563 585 0.98
15 20 0.0023 0.16 13.1 1.7 1 19 591 609 591 611 0.96
16 20 0.22 15 6.8 1.1 1 19 620 638 620 642 0.82
17 20 0.00047 0.033 15.2 0.2 1 23 648 670 648 670 0.98
18 20 0.015 1 10.5 1.3 1 23 675 697 675 697 0.97
19 20 3.7 2.6e+02 3.0 0.5 1 23 730 753 730 753 0.93
20 20 0.00011 0.0077 17.2 0.4 1 23 759 782 759 782 0.97

Sequence Information

Coding Sequence
ATGGCTATAGTCACTGCAGGCCTCGCCGTGACAACGAGGGTGCATAGTTTGGTAACCGCGGGAAGATGGTCACAGGCGTGTCGCCCATGCGAGTACCGATACGGTGGACAGCCACACGAGCGACTGCGCAACCGCTGGCCACGGGAGCGCTGGCGCGTGCAATCGGAGGGTGCACTATGCAGAGTGTGCCTCGTAGGAGTCAAGAGCTGTTCCATCAGAGGCACCGCCCTGCAAACTGTGTACGAGAGGCTGACTAACAACAAGCTTCTTGTCCCGGGCCGGGGGGAGTGTTTGTGCCACATATGTCGCTGTCAACTGCTGAAGTGCGTGAGGCTCGCCAGCAAGGCGGGGAGATCAGAACAAATACTAACGGAGCTACTGCGCAATGGCATTGAGcTGTCTCATGAAACGGTGAGGTTGCTTAACAGTAAGAGTAAACCCTATCTGGAGGTGTCCTCGACGGAGTGTCTATCGTACTTCGCGTTCGGACCACTGTGCACAGTGGACCTCAGCAGGACAAACCTGCTTTCCAAATCATACGCGCTGCAAACTGAAGataaaaTAAAGAAGGAGTTCGATGTGGAGACGCCATGTTTTAGGTTCAAATGCGGTGTCTGCACCCACAAATGTAAGGGACTCGATAAGTTCAGAAATCATTTGAGATTGCACGCGGCGAGCCGACCCTACGCCTGCAATTTATGTTCATTCAGATTCAAGAGACATGGCTCCTTAACAGATCACAAGAAACAAGTCCACGTAACAATCTATAAATGCCCGAAATGCTACGAAAAGTTCAGggataaaaacaaatttaattcaCACGTGAAAAGTCATATGGAGAATATGTACAAGTGCGATTTTTGCGAGAATTTGTTTTTAGACAAAAGTTATATGGCCCGGCACAAGAAATACGTACATGGAGATAGTAAATATACGTGTGATCGGTGCAACAGCCCATTCCCGACTGAGCTGAGCTTGAAAATACACGTTATAGATGCTCATGGAACTTTTCCGTACTACATTTGCGATTATTGCGGTAAGAAGTTTAAAAGTAAATCTACTTTAAGAAAACACGTGATATGTCATATGGATAGAAGGAATTATAAATGTGATGTTTGCgaaaaatgtttcaaaaataCAGCAGGTTTGAACCAACATTTAAAAGTGCATGAAAAAGCTTTCAAATGTGATTATTGCCCTAGAAAATTTACTTTGAAAATTCAATTGGCTTTACATGTGAAATATCATCTCAACCAGAGGGATTTTAAATGCGAAATATGCGAAAAAAGTTTTGTGGGCAAATATGCTTTGAAGGCACATTTAAAGGTGCACATTAGAAAGAGATATGTCTGTGAAGTGTGTAACGCTAAGTTCctaaggaaattattttatgaagaaCATATTCGGCAACATAAGACTGGATTTCAAAGATACGTTTGCGATGAATGCGGGAAAATATACTCACTGGAAAGCCAGTTGAAAATACACAAGTATAGGTGTAATAAACCAATCCCACAGAGGAAGTTAGAAACATGTAATATATGTCAAAAACAAACGAAATCTCTTCAAAATCATATGAGAATACACAACGGGTTAAAACCATATAGTTGTGATATTTGCGGAAAAGCATTCAGGTCTTCAAGTAATCGGTTGACCCATCAGAGGACACACTACGGACTTAAACTATTCGGATGTGATGAATGCGGACATTTTTTCGCGAAGAAATACTATTTAAAACAACATTTAACGACACATGGCGCGGCCAAACCGTATAAATGTGATATGTGCGACGCCGCTTACTCGCATCCGAGTAAATTATCTCACCACAAGTATTGCAAACACAGAGAAAGGAAACTGTATACGTGTGACAAATGCAATGCAAGCTTCGCTGAGAAACGCAGTCTAGACTTCCATAATACTACTCACACTAAAATACTGCAATTCATATGCGATTTATGCTACAAAGTGTACATCGACAGAGCAGATTTCATCCTCCATCTGAGAAGTCACAGAAGAAAGAAATTTACATGTGAAGTGTGCAACAAAAAGTTTATGGCGTTGAAGATTTTGTCGCGGCATATGAAACAACATATGCGGGAGAAGTCTGTCTGTCCGTTGTGCAAGGCTGTAATGGACAGAACTAGTGTTAGGAGGCATTATCATATGTCACACGGCGGTGTGATGCCGTACGCTTGTAATGTTTGCGAAGAGGGCTCCACTGTGATAGAGCAAGTGTACAATCATTATATGCGTTGTCATAGCAAAGAAGATAGATTTGTGTGTGGGCTGTGCAGTGCTGTACTTAAGAGAAATTCAACTCTTAGAAGGCATATGAAAAATGTACATTGCAttgatttaaattga
Protein Sequence
MAIVTAGLAVTTRVHSLVTAGRWSQACRPCEYRYGGQPHERLRNRWPRERWRVQSEGALCRVCLVGVKSCSIRGTALQTVYERLTNNKLLVPGRGECLCHICRCQLLKCVRLASKAGRSEQILTELLRNGIELSHETVRLLNSKSKPYLEVSSTECLSYFAFGPLCTVDLSRTNLLSKSYALQTEDKIKKEFDVETPCFRFKCGVCTHKCKGLDKFRNHLRLHAASRPYACNLCSFRFKRHGSLTDHKKQVHVTIYKCPKCYEKFRDKNKFNSHVKSHMENMYKCDFCENLFLDKSYMARHKKYVHGDSKYTCDRCNSPFPTELSLKIHVIDAHGTFPYYICDYCGKKFKSKSTLRKHVICHMDRRNYKCDVCEKCFKNTAGLNQHLKVHEKAFKCDYCPRKFTLKIQLALHVKYHLNQRDFKCEICEKSFVGKYALKAHLKVHIRKRYVCEVCNAKFLRKLFYEEHIRQHKTGFQRYVCDECGKIYSLESQLKIHKYRCNKPIPQRKLETCNICQKQTKSLQNHMRIHNGLKPYSCDICGKAFRSSSNRLTHQRTHYGLKLFGCDECGHFFAKKYYLKQHLTTHGAAKPYKCDMCDAAYSHPSKLSHHKYCKHRERKLYTCDKCNASFAEKRSLDFHNTTHTKILQFICDLCYKVYIDRADFILHLRSHRRKKFTCEVCNKKFMALKILSRHMKQHMREKSVCPLCKAVMDRTSVRRHYHMSHGGVMPYACNVCEEGSTVIEQVYNHYMRCHSKEDRFVCGLCSAVLKRNSTLRRHMKNVHCIDLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-