Basic Information

Insect: Xanthorhoe designata
Gene Symbol: -
Assembly: GCA_963582015.1
Location: OY757043.1:9657233-9662528[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.2e-07 8.2e-06 26.6 1.8 1 23 158 180 158 180 0.99

2 11 0.0012 0.08 14.0 0.5 2 23 195 216 194 216 0.97

3 11 3.9e-05 0.0027 18.6 4.9 2 23 224 245 223 245 0.95

4 11 0.0018 0.13 13.4 4.8 1 23 251 273 251 273 0.99

5 11 6.6e-06 0.00046 21.1 1.4 1 23 279 301 279 301 0.97

6 11 1e-05 0.0007 20.5 0.7 1 23 307 329 307 329 0.95

7 11 4.7e-05 0.0033 18.4 0.1 1 23 335 357 335 357 0.97

8 11 8.6e-06 0.0006 20.7 1.2 1 23 363 385 363 385 0.98

9 11 5.7e-06 0.0004 21.3 2.9 1 23 391 413 391 413 0.99

10 11 5.5e-06 0.00039 21.3 0.5 1 23 419 441 419 441 0.98

11 11 2.4e-05 0.0017 19.3 1.5 1 23 447 469 447 469 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.2e-07	8.2e-06	26.6	1.8	1	23	158	180	158	180	0.99
2	11	0.0012	0.08	14.0	0.5	2	23	195	216	194	216	0.97
3	11	3.9e-05	0.0027	18.6	4.9	2	23	224	245	223	245	0.95
4	11	0.0018	0.13	13.4	4.8	1	23	251	273	251	273	0.99
5	11	6.6e-06	0.00046	21.1	1.4	1	23	279	301	279	301	0.97
6	11	1e-05	0.0007	20.5	0.7	1	23	307	329	307	329	0.95
7	11	4.7e-05	0.0033	18.4	0.1	1	23	335	357	335	357	0.97
8	11	8.6e-06	0.0006	20.7	1.2	1	23	363	385	363	385	0.98
9	11	5.7e-06	0.0004	21.3	2.9	1	23	391	413	391	413	0.99
10	11	5.5e-06	0.00039	21.3	0.5	1	23	419	441	419	441	0.98
11	11	2.4e-05	0.0017	19.3	1.5	1	23	447	469	447	469	0.97

Sequence Information

Coding Sequence: ATGTCGAGTTTATTGCTTCGCAAGGATCTCAAATATTGTTGCAGAACATGCTTGAATGATTTGTCAACTAAAATGCACGGTTTATTTGATAAGAAAGACTCTCCCAGCGTGGCTGAAATATTATCAATGTTTACCGATATTCTGGTGCAGTCTGGAGACATGCTTCCAAAAAACTTATGCAGCAGCTGTTATAACTGCCTAATAAACTTCTATGATTTCAAGAAACTCGCTGAGAAAGTGGACTTACAACTCCATCAGTACTACGACAATATTGTATCACCAGACAAACCCTTTGAAGATACTGAGCTACCATTAAAGAATGAAGTTGGCGATTCCGATAATGACTATGAATTTGATCTCAAAAATATAAAGACAGAGGAGAATTCACAGGAAAGTGATAGTTACATCTCAGAATGTTCTTATCCAGAATATAAGTTAAGAACTAAGAAATGTGTGAAAAAGACACCTTTTTACAAGTGTCCGGAATGTAAGAAGACATTTAAGGTGCAAGAAAAACTTCAAAGACATCTCCTTACACACAAAGCAGATCAAATCTTGTCAAATGATGTGACAGCACCTGTCACATGTGATATTTGCTCATCTACATTCCGTTCAGTAAACTCTCTCGCTGCGCATAAACGGAAACACGTACCTAAAGGCAGAATATTATCCTGCCAGCATTGCggtaaaatatttaagaaaaccAGCCACTTAAAGCGACATGAGGCATCACATGATGTGAATCGCAAATACAAATGTACTTTATGCCCTAAGAGGTACCATTTAGAAAGTCAATTGATGGAACACATGCACAAACACAATGGTGTAAAGCCCCATCCGTGTCCAATATGCCCAAAAGCATTTGCACATTTATCAACATTTAATAATCACTTAAAATTACATACAAGGGGAAAACCGTTTCTTTGTCCGACTTGTGGCAAAGGTTTTGATACTAGTACTAATATGACTCAGCATGTGAAAAGACATCTTGGTTTGAAGGAGTTTGCATGTAATTTATGTCCGTGGAAGTTTGTAAGTGCGGGTGAGTTGAAATCGCACAAATTGACGCATACAGGAGCAAAGCCGTATGCATGTAAGCAATGCCCCGCCTCGTTCACTGCGCCACATTCGCTCAAGAAACACATGATGAAGCATCTCGGACTCAAGCCGTTTCAGTGCGATACCTGTCCTATGAAGTTTACAAAGAAGGAGTATCTAAACAACCACTACCGCACACATACGGGGGAGAAACCGTATCGATGTGATTTGTGCGAGCGGGCATTTACTCAGAGCGGGGATTTGCTCAAACACAAACGTGCGCATTTAGGGACCAATATGTACAAATGTGACCAGTGTACACAGAGCTTCCGTTTGAAGTCCCAACTACGAGAACACATATCTGACCACTACGTATCAGCTATGAAGGCCAAAGACGCACAAGAGGACACCGCCAAAATTGAAAATGCAGATGGCGCCAGTTGA
Protein Sequence: MSSLLLRKDLKYCCRTCLNDLSTKMHGLFDKKDSPSVAEILSMFTDILVQSGDMLPKNLCSSCYNCLINFYDFKKLAEKVDLQLHQYYDNIVSPDKPFEDTELPLKNEVGDSDNDYEFDLKNIKTEENSQESDSYISECSYPEYKLRTKKCVKKTPFYKCPECKKTFKVQEKLQRHLLTHKADQILSNDVTAPVTCDICSSTFRSVNSLAAHKRKHVPKGRILSCQHCGKIFKKTSHLKRHEASHDVNRKYKCTLCPKRYHLESQLMEHMHKHNGVKPHPCPICPKAFAHLSTFNNHLKLHTRGKPFLCPTCGKGFDTSTNMTQHVKRHLGLKEFACNLCPWKFVSAGELKSHKLTHTGAKPYACKQCPASFTAPHSLKKHMMKHLGLKPFQCDTCPMKFTKKEYLNNHYRTHTGEKPYRCDLCERAFTQSGDLLKHKRAHLGTNMYKCDQCTQSFRLKSQLREHISDHYVSAMKAKDAQEDTAKIENADGAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00267423;
90% Identity: -
80% Identity: -