Xdes023889.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757058.1:1757694-1761387[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.007 0.49 11.5 0.1 1 23 47 70 47 70 0.92 2 22 0.25 18 6.6 0.2 2 23 97 118 96 118 0.96 3 22 0.00086 0.06 14.4 0.9 1 19 166 184 166 187 0.95 4 22 0.13 9.2 7.5 0.0 2 23 199 221 198 221 0.94 5 22 0.066 4.6 8.5 0.7 1 23 227 250 227 250 0.88 6 22 0.053 3.7 8.8 0.1 1 11 257 267 257 270 0.92 7 22 0.025 1.7 9.8 0.2 1 23 316 338 316 338 0.96 8 22 0.62 43 5.4 0.1 2 23 363 385 362 385 0.92 9 22 0.5 35 5.7 2.2 1 23 407 429 407 429 0.94 10 22 0.0011 0.075 14.1 0.3 1 23 433 455 433 455 0.96 11 22 0.0017 0.12 13.4 2.2 1 23 460 483 460 483 0.94 12 22 0.00058 0.04 14.9 2.4 1 23 489 512 489 512 0.96 13 22 0.008 0.56 11.4 0.8 1 23 518 541 518 541 0.94 14 22 0.21 14 6.9 0.3 2 23 562 584 561 584 0.96 15 22 0.0024 0.17 13.0 5.9 1 23 607 629 607 629 0.98 16 22 2.8e-05 0.002 19.1 0.2 2 23 634 655 633 655 0.97 17 22 0.00042 0.029 15.4 0.9 1 22 663 684 663 687 0.91 18 22 0.00017 0.012 16.6 2.4 1 23 692 715 692 715 0.95 19 22 0.0045 0.32 12.1 1.5 1 23 721 744 721 744 0.97 20 22 0.00017 0.012 16.7 1.8 1 20 750 769 750 772 0.94 21 22 3.7e-06 0.00026 21.8 1.1 1 23 778 800 778 800 0.99 22 22 0.00026 0.018 16.0 5.0 1 23 806 828 806 829 0.96
Sequence Information
- Coding Sequence
- ATGCGTAGGCGACGTCGTGCCAACAACGAGTTCCCTGAAGAATCTGACAAGCGAATCTCGAAGACGATGATGATGCGAAACGCCACCACACTTCTAGAGTGTTCCACGGCCTGGGCCTTTCGGTGGTACCGAGGAGCATTCTACTGTGCTTATTGTGATATCAAATTCATTGATACTCAACTGCTAAGAGATCATGTTATAGCGATTCATCTCAACGAACCGCCATCGAAAAGAGTTTTCTCAAAACTCAGAGAAAACAACATGGTCAAAATAGACATAACTCAGCTTCAATGCAGATTCTGCGATGTTAGTCTCGGTAGCATAGAATATCTCAAAACTCATTTAGAATCTCACGGTAGATTTGTTAAAAGAAACTACAGCGATGGAGTACTGCCCTTTAAGCTAGATGAAGGTGGATTTTACTGCCAAATGTGCTCATCTCACTTCCTTacgtttacaaaaataaacgaaCATATGAACTCTCATTACCAGAACTACGTTTGTGATACTTGCGGTAAAGGATTCATCTCGAAATCAAGATTCAGAGCACATAATCATAGAGAGAATAATCATCTAACTGAAGAAAATAGCGTTCCTTGTGGAATATGTGACGAAGTGCTTAGCTCAAAAGCTGCTAGAATGAGTCATAGATTGAGAGTGCACCGCAAGGGAGTTCGATACAGCTGTCCACGATGTTCAGAAGTATTCACTTCTTACAACGCTAGGTCCAACCATCTGGTGCAATTCCATGCTCAGCGAAGCTTGGTATATGTGTGCAATGTTTGCAACAAGTCGTTCAgACTGGCAATGGACGCTTCCAGCCCGGAAACAGAGGACCGTCAAATAGTCTGGAAGCGGAAACGAGTCGTGCCAGCAGAAAAACAAAACGCAGCCCTTATATTAAAGTATTCAAACGCTGTTGCCTTTCGATGTCAAAGAGGAAAGTTCATGTGCGCTTACTGTCCTAAAATAAGCATCAATATGACTGAACTTCGGTCTCACACATCCGAACATAGCAAGTTAGATGtatttgaaacaaacaaaatccGTCTGCGTCTGCCGGTGAACATAGAAATCACAGATCTTAACTGCAAAGTTTGCGCTGCGGTCATCAGTTATGTTGATgagttaaaaaaacatctaaatgACTCGCATAACATTAAAATGAACCCAAACTGCACGGATGGTGTGGTACCGTACCGTTTGATCGCGCAGGAGTTTGTCTGCGCCTGCTGTGATATGCGGTTCGACAAATTTCCTACTCTGTCTATGCACATGAATAAACACTTTCCAAGCTTTGTGTGCGACTCTTGTGGAAAAGGTTTCACGGCAGAATACAAGCTTCGTTCGCACAAAGCGATTCACGATTTGGGTCAATTTAAATGCACACATTGTGATATGGTTTTCCCGAATCGAAGTAGTAAGCTCACCCATGTCGATATGAAGCATCGTTCGAAAGACAGGTATCGCTGTCCAATTTGCGACGAGCATTTTACTTCATACTACAGTAGGCTGAAACATCTTAAAGCGACACATGGAGAGTCGTCTGAGTACTATTGTTCTTATTGTCCGGCAGTCTTCAAGACTAGCAATTCCAAATACTTGCACCAGCAAGGAGTGCATTTGAAAATTAAGAAAAAGAGAAAAGGCAAACGGACTCTCAAATGTGATGTCACAGATTTAAAATGCGAGCTCTGCTTCGAAAGCATAAAAGATTTCAACACTTTAGTAGAACACCTAAAGAGTGTACACAAAAAGTCTATTGTTACCGACCTTGGTCTAGGTATCTTCCCATTTAAAATCATTGCAGATGGTGATTTTCATTGCACGTACTGCACTGAAAAGTTCAAACTCTTCACGAGTTTAAATAAGCATATGAACAGCCATTTCCCTAATTCGGTGTGCCCTCTTTGCGGTAAAGCATTCTCGGAAAGCAATAAGATGACTGCGCATTTGAACACCCATGGTGTCGGAACCAAAGGGCAGTTCAAATGCACTAAATGCGACGAGGTCTTCCCGAGCGCTTACgatagaaataaacacagaatGTCGGTAAAACACTCTACAATGCGTTACCGATGTCCACATTGCAATGAAGGCTTCAAAAGCTACTCGAACCGGTTGAAGCATTTGAAGGATGTTCACGATTCTAAAGTAGAGTACCCGTGCAGTTTGTGTTCTGCTGTTTTTAGGATGTCGAATCACAGGACGAAGCACATCCGACAGGTTCACATTAAAGATAAGCGGTTCAACTGTACCGTTTGCCCGTACCAGTTCGTGACTGCCTATCAGTTACAGCGACATATGATTTGCCATACGGGGGAGCGAAAGTACGAATGTCAAGTCTGTAAGAAGTCGTACTCTAGAGTAAACACATTGAAGGAACATATGCGGATACACAATAATGATAGGAGATTTGTGTGCGTGTACTGTAGCAACGCGTTTGTGCAAAAATGTAGCCTTAAAAGTCATATGAGGACGCACCATCCGAACTGTGAATCGCTTTCGGATGAAAAGAAACACTGA
- Protein Sequence
- MRRRRRANNEFPEESDKRISKTMMMRNATTLLECSTAWAFRWYRGAFYCAYCDIKFIDTQLLRDHVIAIHLNEPPSKRVFSKLRENNMVKIDITQLQCRFCDVSLGSIEYLKTHLESHGRFVKRNYSDGVLPFKLDEGGFYCQMCSSHFLTFTKINEHMNSHYQNYVCDTCGKGFISKSRFRAHNHRENNHLTEENSVPCGICDEVLSSKAARMSHRLRVHRKGVRYSCPRCSEVFTSYNARSNHLVQFHAQRSLVYVCNVCNKSFRLAMDASSPETEDRQIVWKRKRVVPAEKQNAALILKYSNAVAFRCQRGKFMCAYCPKISINMTELRSHTSEHSKLDVFETNKIRLRLPVNIEITDLNCKVCAAVISYVDELKKHLNDSHNIKMNPNCTDGVVPYRLIAQEFVCACCDMRFDKFPTLSMHMNKHFPSFVCDSCGKGFTAEYKLRSHKAIHDLGQFKCTHCDMVFPNRSSKLTHVDMKHRSKDRYRCPICDEHFTSYYSRLKHLKATHGESSEYYCSYCPAVFKTSNSKYLHQQGVHLKIKKKRKGKRTLKCDVTDLKCELCFESIKDFNTLVEHLKSVHKKSIVTDLGLGIFPFKIIADGDFHCTYCTEKFKLFTSLNKHMNSHFPNSVCPLCGKAFSESNKMTAHLNTHGVGTKGQFKCTKCDEVFPSAYDRNKHRMSVKHSTMRYRCPHCNEGFKSYSNRLKHLKDVHDSKVEYPCSLCSAVFRMSNHRTKHIRQVHIKDKRFNCTVCPYQFVTAYQLQRHMICHTGERKYECQVCKKSYSRVNTLKEHMRIHNNDRRFVCVYCSNAFVQKCSLKSHMRTHHPNCESLSDEKKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -