Xdes023633.2
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757057.1:4313663-4328930[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.29 20 6.4 0.0 1 23 178 201 178 201 0.95 2 22 0.00024 0.017 16.1 0.3 1 23 276 299 276 299 0.97 3 22 1.1e-05 0.0008 20.3 6.3 1 23 303 325 303 325 0.98 4 22 0.26 18 6.6 3.3 2 23 333 353 332 353 0.96 5 22 0.0011 0.076 14.1 2.2 1 23 392 415 392 415 0.91 6 22 0.0032 0.22 12.6 3.9 1 23 421 444 421 444 0.97 7 22 0.00023 0.016 16.2 0.4 2 23 455 476 454 476 0.96 8 22 0.00022 0.015 16.3 0.1 2 23 483 505 482 505 0.96 9 22 0.13 8.8 7.6 2.5 1 23 670 693 670 693 0.97 10 22 0.11 7.9 7.7 4.4 1 23 700 722 700 722 0.96 11 22 5.9 4.2e+02 2.3 0.3 1 19 726 744 726 749 0.89 12 22 0.0012 0.082 14.0 1.0 1 23 754 777 754 777 0.96 13 22 9.1e-05 0.0063 17.5 0.9 5 23 784 803 783 803 0.95 14 22 0.098 6.8 7.9 0.2 3 23 811 828 810 828 0.80 15 22 0.00042 0.029 15.4 1.1 3 23 837 857 836 857 0.97 16 22 0.00042 0.029 15.4 1.1 3 23 866 886 865 886 0.97 17 22 0.00042 0.029 15.4 1.1 3 23 895 915 894 915 0.97 18 22 0.01 0.73 11.0 0.4 3 21 924 942 923 947 0.93 19 22 0.0075 0.53 11.4 0.4 1 23 956 979 956 979 0.94 20 22 0.012 0.81 10.9 3.8 1 23 985 1008 985 1008 0.94 21 22 1.1e-05 0.00076 20.4 1.3 3 23 1019 1039 1018 1039 0.98 22 22 4.3e-05 0.003 18.5 0.2 1 23 1045 1068 1045 1068 0.96
Sequence Information
- Coding Sequence
- atgagcTCGGCCATTTCGAAGCGCTATTGCTGCACTTGTCTTTGTGAAGATCGAAAGTTATTCTTACTATGTAGAGTGCCGGAAGGAGTTAATcttttgtatttgttattaATGTGCGATTCAGATGCCTATAGGgaaggatttttcaaagATACAGCAAGTTGGATGGTTTGCTGGGAATGCTGTGCTACTGTCAAGAAAATAATGCAATTCCGATCTCAAACATGTAAGGCTTTGAAACAGTTGAAAGAACTTGCTGATGGCAGAATTGATGAGACAGAACTGCAGACCCTGTCTAGTTTATCAACCTATCATTCAGCATCTAAAATTGAAACCAATATCTTCGTTGACTGTAGTACAGACAAACTTAAGAATGAAACTATAGATGACATAGAACCAGATATTTTAGATGAAACAGATACAGAAACAAAAAAGATTAAAAAGAAAACCAAGTTTTATAAATCAACTGTGATGGAGGCTGCAGAGTTGATGAAAGAAATGGATAGACAAAGACTGGAATTGAAGGGTGTTTTCAAATGTGATTCTTGTGTGCTTGGTTTTGAGGATGAAGTTGGCTTGAATTCACATGTGATGGAGCTACATACTAAGaaagaAAACCACAGTCCCTGCCTCATATGCCGGGCATACATCCCAGATGATACATTAGACACACACACACGCGCACACTATCGCATATATGTGTGTGTGCTGTGTGATCACACAGAATATATACGGGAGGGTATCGTAAGACACCTTGAAGGAATGCACGGGAAAAGTGTCGGCAAGAAAAAGaAAAGAAAAACTAAGTCAACTGAGACCGTCAAATACCCATGCACTGAATGCGATATGACTTTTGAGAACAAAGGCGCGAAATGGAAGCACATACAGAAAAGCCACAGGGCCGGTCATCAGTGCGATGTTTGCAAGAAAGTGTTCACGTTCAAACACAATTTGCAACGACATCAACTTAGTCACACAAACGGGCATCCTCGCACCGAGTGTCCACACTGTCACAAACAAGTGCGCACTAGCCTCCTCACTCCCCACCTCCGTACACacgcgccgcgcgccgcgcgAGCCTGCCAGCCGTGCGGGAAACAGTTCGTGTGTAGAGAGACCTACGAAAGCCATCTGAAGTACGCTACTGCACACGCTGGTCAACATTTACTGAGACATGCGTGCACCTCATGCGACAAGAGGTTTCGATCGCGCGGCGAGTTGCGCGACCACGTGACATACAGGCACGACGCTACACCCACACACAAGTGTCCAGTGTGTGACAAGATGCTAGCGACGCGCCGCTGCGTGACGCGGCACGTGAGACGCACACACGAGGGGGTGCAGGAGAGAGCGAGAGACAAGATGTGCGACTACTGCGGACTGGCATTTCGAgaCAAGCAGTCTCTATCCGAGCACGTGTCGCGACACACCGGTGCGCGACCGCTCACCTGCGCGCGCTGCCCCCGCGCCTTCCGACAGCGCGCCGCGCTCACCGCGCATGCGCGCCGCGCACACCCGCGAGAACAAAGCGAACTCAAAAGTTCAATCTTAAACTACAATGATGTCTGTTGTGAGCAAGATATTGCAAAATTCCAATTAAGTCACAGACATAGCTCAGATGTGATACAAACTGATCTGCCACAGATTAAATCGGAAAACAACAAGGAGGTTGAACAAAATGTGCTCCAGAACTATTGGTTTAcagtaaatagttttaaaagcaATGACAGCAATCACACTGTGACCGACgaggttttaaatattaaacatGAACCAGACTATGATTTGTACAACGATGAAGTAACTGTTGAAGAATTATGTGTTAATGAATTAAAAACAAGAAAAGAAAATGTAACaccaactaaaactaaaaatcagAAGTTTCgtaagaaaaatgaaatgatagTGACAAAAGATCATTATGTTATAACTAAAATGACGGAAGATGAAATGTTAGCGAAGAGAGAGAGTGACAGACAGGCAGACAGATATAAGAACAAGGTGAAATATAGATGCGAATTGTGTATAGTCGGGTTTTTTCATAAGGAATTGTATGAGAAGCATATGAAGAGCAGACACTCAGAGACAGCAGGTAACCACAAATGTTGCGTCTGCGAGACGCGTTTCACTAGGATCAATTACTACAAGGAACACATAGAGGGTCACTACACTAGATACGTCTGCAGGACGTGCGGACACGTCGGCTACAAGCTGAGCGAGATGGTCGCGCACGACGCGAAGACGCACGGCCTTGAGAGGTTCAAATGCAGAGTGTGCGGGGAATTTTTCCCATCACCGTCGAGTCTACGTTTCCACCGCGAGACACGGCACACGGCGCCGCGCGCCTGCGACTGCGGGAAGACGTTCCGGACCAAGAACGCGCTGAGAGTTCACATGCAACAGATGCACACCTATAAGCCAAAATCGCCGTGTCCAGTGTGCGGCACGCGCGTTCGCTATCTTACGAGTCATATGCGCACGCACGCGGCCGCGCCCGAGGCCGCGTACTGTGCCGAGTGCGACCAGAGGTTCACCAGCACCGCGTCCTACAAGTCGCATCTCAAGACGCACGAGGCCGCGCCCGAGGCCGCGTACTGTGCCGAGTGCGACCAGAGGTTCACCAGCACCGCGTCCTACAAGTCGCATCTCAAGACGCACGAGGCCGCGCCCGAGGCCGCGTACTGCGCCGAGTGCGACCAGAGGTTCACCAGCACCGCGTCCTACAAGTCGCATCTCAAGACGCACGAGGCCGCGCCCGAGGCCGCGTACTGCGCCGAGTGCGACCAGAGGTTCACCAGCACCGCGTCCTACAAGTCGCATCTCAAGTACGCGGCGAGACATCGCGCGCCCGACACTGTACTCAGTCATGAGTGTGGTCTGTGCTCCGCGCGCTTCGTGACCGCTGCGGGACTGAAGAAGCACACGCTTCTCCGACACTCCACCGTGCGGCCCTTCAAGTGCGACAAGTGTGGAAAGGGTTTTGAGGCGCAGTGCAAGTTGAAACTCCACACACTGCACGCACACGAGGGGGTCGAGAAACCCAAGGACAAGATCTGTCACATCTGCGGACGCGGGTTCAATACAAAATTCATGTTGAGCAACCACATCCGCGTGCACACGGGGGAGAAGCCCTTCCGCTGCGAGATCTGCGCCGCGGCCTTCAGCCAGAAGAGCTCTCTCACCACGCACACACGCGGGGTCCACCTCAAGCTGAGGCCGCGCCCAGGCCGCCCCCAGCGCCCCTAG
- Protein Sequence
- MSSAISKRYCCTCLCEDRKLFLLCRVPEGVNLLYLLLMCDSDAYREGFFKDTASWMVCWECCATVKKIMQFRSQTCKALKQLKELADGRIDETELQTLSSLSTYHSASKIETNIFVDCSTDKLKNETIDDIEPDILDETDTETKKIKKKTKFYKSTVMEAAELMKEMDRQRLELKGVFKCDSCVLGFEDEVGLNSHVMELHTKKENHSPCLICRAYIPDDTLDTHTRAHYRIYVCVLCDHTEYIREGIVRHLEGMHGKSVGKKKKRKTKSTETVKYPCTECDMTFENKGAKWKHIQKSHRAGHQCDVCKKVFTFKHNLQRHQLSHTNGHPRTECPHCHKQVRTSLLTPHLRTHAPRAARACQPCGKQFVCRETYESHLKYATAHAGQHLLRHACTSCDKRFRSRGELRDHVTYRHDATPTHKCPVCDKMLATRRCVTRHVRRTHEGVQERARDKMCDYCGLAFRDKQSLSEHVSRHTGARPLTCARCPRAFRQRAALTAHARRAHPREQSELKSSILNYNDVCCEQDIAKFQLSHRHSSDVIQTDLPQIKSENNKEVEQNVLQNYWFTVNSFKSNDSNHTVTDEVLNIKHEPDYDLYNDEVTVEELCVNELKTRKENVTPTKTKNQKFRKKNEMIVTKDHYVITKMTEDEMLAKRESDRQADRYKNKVKYRCELCIVGFFHKELYEKHMKSRHSETAGNHKCCVCETRFTRINYYKEHIEGHYTRYVCRTCGHVGYKLSEMVAHDAKTHGLERFKCRVCGEFFPSPSSLRFHRETRHTAPRACDCGKTFRTKNALRVHMQQMHTYKPKSPCPVCGTRVRYLTSHMRTHAAAPEAAYCAECDQRFTSTASYKSHLKTHEAAPEAAYCAECDQRFTSTASYKSHLKTHEAAPEAAYCAECDQRFTSTASYKSHLKTHEAAPEAAYCAECDQRFTSTASYKSHLKYAARHRAPDTVLSHECGLCSARFVTAAGLKKHTLLRHSTVRPFKCDKCGKGFEAQCKLKLHTLHAHEGVEKPKDKICHICGRGFNTKFMLSNHIRVHTGEKPFRCEICAAAFSQKSSLTTHTRGVHLKLRPRPGRPQRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -