Xdes017948.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757048.1:398926-401496[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00039 0.027 15.5 1.1 1 23 69 91 69 91 0.98 2 17 1.1 76 4.6 0.0 3 20 109 126 108 128 0.94 3 17 4.7e-07 3.3e-05 24.7 1.2 2 23 156 177 156 177 0.97 4 17 3.8e-05 0.0027 18.7 0.2 5 23 187 206 185 206 0.96 5 17 0.0013 0.088 13.9 0.5 1 23 212 234 212 234 0.97 6 17 0.0027 0.19 12.8 0.3 1 23 240 262 240 262 0.97 7 17 0.0021 0.15 13.2 0.1 1 17 267 283 267 283 0.95 8 17 0.0021 0.14 13.2 0.6 1 23 395 417 395 417 0.98 9 17 0.0027 0.19 12.8 0.2 1 23 423 446 423 446 0.91 10 17 0.00032 0.022 15.8 0.7 3 23 454 474 453 474 0.97 11 17 5.5e-05 0.0038 18.2 0.3 1 23 480 502 480 502 0.98 12 17 0.0046 0.32 12.1 0.1 1 23 508 530 508 530 0.97 13 17 8.2e-05 0.0057 17.6 0.1 3 23 607 628 607 628 0.93 14 17 4.3e-06 0.0003 21.7 0.5 1 23 634 656 634 656 0.96 15 17 0.0098 0.69 11.1 0.2 3 23 664 684 663 684 0.97 16 17 0.37 26 6.1 0.0 6 23 693 710 692 710 0.95 17 17 0.052 3.6 8.8 0.4 6 23 720 737 717 737 0.95
Sequence Information
- Coding Sequence
- ATGGAGCTCGTCTGCCAGGTCTGCCACTTGAAGACCTCCAGCGAGAAGTTCCACCAGCATTTAAACTCAAATCATAAGGATCTGAAAAGTCAGGATGACATACAAGCGTTTGTCGGCGAGCACGTCACGTTCGAAGAGACCCTTGATTCTGATGGAGATTGCTCGTCAGTCGTCTCGGCTGAAGCTTTTGAAGTTTCACGGCGTTTTGAATGTTCCACCTGTCACACAGAATTTGCCACTCGCTCAGGACTCTCCCTTCATCTCGGAACACATGATGCAAACGGTACGTTGTGTTGCGGCTCCAATGAAACGGAACAGGTAGCATGTAAAGGTTGCGATCTCATCGCAGCAGATACAGCCTCGTTAACCGCTCACATCGCTCAGTGCGCCCCAGCGACACGTGAACTCACCGGGAACCCTCCCGGGCAGATGAGAGACGAGACCAACCAGAAGAGGATCCCGGCCGTGTGCCCCGACTGCAACCGCACCTTCTCCAACAAATACAACATGCTGAACCATATGAAGAGTCACCGGAAACAGACTGCGAAATTCGAGTGCGAATGTGGAAAGAGTTACTCCACTCGCGGGAACCTGGTGGCGCACAGACGGACGGCCCACCTGCGCGAGCTCTCCCACAGGTGCGAGGAGTGCGGCGAGGGGTTCCCGACCCGCTCCGCCCGCGACATCCACCGCCGCCTGCACAGCGGGGCGCGGCCCTTCGCGTGCGCCGTCTGCTCGCGCGCCTTCCGCGCCAAGAACTCTCTCGACAAGCACCGAGAGACGCACGCGCCCGGACAGTTCCCATGCGCGCTCTGCGGGAGGAGCTTCCGGAGGAGGGCGCATCTGAGGTTCTCGGAGGGCTCGCCCGAGCGCGACTCGGACGCGAGCTCGGACTCGGCCCCGCTCGTCCGCCGCGCTCgctcgcccccgccccccgccccgctcGCCGCGCTGCGCCGCGCGCTCCACCGCCTGCGCGACCACTACGCCGCGCACCACctgcccccgcgccccccgcccgcCCCCTCCGCGCCCCCCGGGGACGCGGCGCGGCCGGGGGACGAGAGGGACCTCGACCGCTACGACGACCTGACGCGTCACAACATGCGCCGCGACCGCTTCGACCCGGAGACGCGGCGCGCGCTCGACGCGGCGCGCACGCGCAGCGAGGGCCGCACGCTGTACGAGTGCGCGACGTGCGGCCGCCGCCTCGCCTCGCCGCACGCCTTCGTGCACCACGCGCGCATCCACACCGGCGAGCGACCGCACGTGTGCCACGTGTGCGGGGCCCGCTTCCGCGCGCCGCAGGGGCTCGCGCGGCACGTCGCCGAGACGCACgagcggcgccggcgccgcgcctGCCGCCTGTGCCGCGCCACCTTCGCCAACGAGCAGAACCTGCGCCAGCACCTGCGCACGCACACCGGCGAGCGACCCTTCCGCTGCGCCGCGTGCGGACGACGCTTCGCGCAGAGCGGCGCCCTGCACGCGCACGCGCGCACGCACTCGCCGCGTCGCCCGCACGTCTGCGCGCTCTGCCCCGCCGCCTTCCGCCTGCGCGCCGGGCTCGCGCGCCACGCCCGTCGCCACGCCGGCGTGCGCCCGCACCGCTGCGCCTGCGGCCGCGCCTTCCACGCGCGCCACGAGCTGGCTGCGCCGCGCGCTGCGGGACCACGCGCGCCGCAAGCACCCCgacgcgccgccgccgcccccgcTCACGAGAGCCTCCTTTGCAGGGACCGCGCCGACCTAGCGGCCGCGCCGCCCCGCGAGGcaccccccgcccccgcccccgccccggaGCGGCGCCGGCACGGGTGCGCGACGTGCGGGCGCGTGTTCGCGGACGCGAGCAACCTCGCGCGGCACACGCTGGCCCTGCACGCGGGGCTGCGCCCGCACGCGTGCCCGGCGTGCGGGCGCGCCTTCAGCCGCGCGGAGCACCTGCGCGCGCACGTGCGGCTCCACGCGGCGCCGGCCCCGCTGCTGTGCGAGGCGTGCGGCGCGGCGTGCGCGTCCCCGGCGGCGTTGCGCTCGCACCGGCGACGCCACGGCGCCGCGCGCCACGCGTGCGCGTGCGGTGCGCGCTTCCACCGCGCGGCCGAGCTGCGCGCGCACGGCGCCGTGCACGCGGGGCTGCGGCCGCACGCCTGCTGGTGCGGGCGCGCCTTCCGGCTGCGCGCGCAGCTCAACATGCACTCGCAGCGGCACCGCGGGCGACACGAGTGCGGCCCGGCGGCGCCCGGCCTCGTCTCGGAGGAATGGCCCGCGGTAGACCCCGCTCCTCCCGTGTAG
- Protein Sequence
- MELVCQVCHLKTSSEKFHQHLNSNHKDLKSQDDIQAFVGEHVTFEETLDSDGDCSSVVSAEAFEVSRRFECSTCHTEFATRSGLSLHLGTHDANGTLCCGSNETEQVACKGCDLIAADTASLTAHIAQCAPATRELTGNPPGQMRDETNQKRIPAVCPDCNRTFSNKYNMLNHMKSHRKQTAKFECECGKSYSTRGNLVAHRRTAHLRELSHRCEECGEGFPTRSARDIHRRLHSGARPFACAVCSRAFRAKNSLDKHRETHAPGQFPCALCGRSFRRRAHLRFSEGSPERDSDASSDSAPLVRRARSPPPPAPLAALRRALHRLRDHYAAHHLPPRPPPAPSAPPGDAARPGDERDLDRYDDLTRHNMRRDRFDPETRRALDAARTRSEGRTLYECATCGRRLASPHAFVHHARIHTGERPHVCHVCGARFRAPQGLARHVAETHERRRRRACRLCRATFANEQNLRQHLRTHTGERPFRCAACGRRFAQSGALHAHARTHSPRRPHVCALCPAAFRLRAGLARHARRHAGVRPHRCACGRAFHARHELAAPRAAGPRAPQAPRRAAAAPAHESLLCRDRADLAAAPPREAPPAPAPAPERRRHGCATCGRVFADASNLARHTLALHAGLRPHACPACGRAFSRAEHLRAHVRLHAAPAPLLCEACGAACASPAALRSHRRRHGAARHACACGARFHRAAELRAHGAVHAGLRPHACWCGRAFRLRAQLNMHSQRHRGRHECGPAAPGLVSEEWPAVDPAPPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -